Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG806_RS35020 Genome accession   NZ_CP108797
Coordinates   7642130..7642909 (-) Length   259 a.a.
NCBI ID   WP_057613273.1    Uniprot ID   A0ABU2V9I5
Organism   Streptomyces sp. NBC_00882     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7637130..7647909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG806_RS35010 (OG806_34970) - 7638727..7639599 (+) 873 WP_406160833.1 GNAT family N-acetyltransferase -
  OG806_RS35015 (OG806_34975) - 7639969..7641987 (+) 2019 WP_328641292.1 ATP-dependent DNA helicase -
  OG806_RS35020 (OG806_34980) dinR/lexA 7642130..7642909 (-) 780 WP_057613273.1 transcriptional repressor LexA Regulator
  OG806_RS35025 (OG806_34985) nrdR 7643471..7644046 (+) 576 WP_280862202.1 transcriptional regulator NrdR -
  OG806_RS35030 (OG806_34990) - 7644209..7647109 (+) 2901 WP_406394969.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28019.74 Da        Isoelectric Point: 7.0668

>NTDB_id=666758 OG806_RS35020 WP_057613273.1 7642130..7642909(-) (dinR/lexA) [Streptomyces sp. NBC_00882]
MTTTADSATITAQDRSQGRLEPVHAMNEAVNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=666758 OG806_RS35020 WP_057613273.1 7642130..7642909(-) (dinR/lexA) [Streptomyces sp. NBC_00882]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGGACCGTTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCGTGAATCCCGAGGGACACAAGCGGTCCCTCCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCGGGGCTCA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTCCAGCGGCGCGGCTACCCGCCGTCCATGCGGGAGATC
GGCCAGGCGGTCGGGCTGTCCAGCACCTCATCCGTCGCACATCAGTTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTGCGCGGCTCGGACCAGGGCGCCTCGGTGCAGCCCACGGACACCGCGGGCA
AGCCCGCCGCGTCGTACGTCCCGCTCGTCGGCCGGATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTGTTCCCCCTCCCCCGCCAACTCGTCGGCGACGGTGAGCTGTTTGTGCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCGATGCTGG
AAGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTCCTCCCCCACAACTCCGCGTACGAGCCG
ATCCCCGGCGACGACGCGACCATCCTCGGCAAGGTAGTGGCAGTACTGCGACGCGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375