Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG19_RS02490 Genome accession   NZ_CP094094
Coordinates   513956..514360 (+) Length   134 a.a.
NCBI ID   WP_245066726.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe084     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 508956..519360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG19_RS02455 (MPG19_02455) - 509128..510066 (-) 939 WP_245066721.1 tetraacyldisaccharide 4'-kinase -
  MPG19_RS02460 (MPG19_02460) - 510063..510845 (-) 783 WP_245066722.1 NAD+ synthase -
  MPG19_RS02470 (MPG19_02470) ilvC 511094..512086 (+) 993 WP_245066723.1 ketol-acid reductoisomerase -
  MPG19_RS02475 (MPG19_02475) minD 512111..512917 (+) 807 WP_245066724.1 septum site-determining protein MinD -
  MPG19_RS02480 (MPG19_02480) minE 512914..513147 (+) 234 WP_000051424.1 cell division topological specificity factor MinE -
  MPG19_RS02485 (MPG19_02485) dprA 513159..513959 (+) 801 WP_245066725.1 DNA-processing protein DprA Machinery gene
  MPG19_RS02490 (MPG19_02490) dprB 513956..514360 (+) 405 WP_245066726.1 Holliday junction resolvase RuvX Machinery gene
  MPG19_RS07920 - 514653..514850 (+) 198 WP_280636204.1 sel1 repeat family protein -
  MPG19_RS02500 (MPG19_02500) - 515042..515380 (+) 339 WP_050851275.1 hypothetical protein -
  MPG19_RS02505 (MPG19_02505) - 515364..515924 (+) 561 WP_245066727.1 hypothetical protein -
  MPG19_RS02510 (MPG19_02510) - 515935..516273 (+) 339 WP_245066728.1 lysozyme -
  MPG19_RS02515 (MPG19_02515) - 516227..516436 (+) 210 WP_245066729.1 lysozyme -
  MPG19_RS02520 (MPG19_02520) - 516456..516617 (+) 162 WP_180424435.1 lysozyme -
  MPG19_RS02525 (MPG19_02525) - 516735..516938 (+) 204 WP_245061312.1 hypothetical protein -
  MPG19_RS02530 (MPG19_02530) - 516949..517335 (+) 387 WP_180645757.1 DUF1294 domain-containing protein -
  MPG19_RS02535 (MPG19_02535) - 517335..518120 (+) 786 WP_245066731.1 hypothetical protein -
  MPG19_RS02540 (MPG19_02540) - 518110..519240 (+) 1131 WP_245066733.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15272.81 Da        Isoelectric Point: 8.4988

>NTDB_id=666756 MPG19_RS02490 WP_245066726.1 513956..514360(+) (dprB) [Helicobacter pylori strain Hpfe084]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNACIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666756 MPG19_RS02490 WP_245066726.1 513956..514360(+) (dprB) [Helicobacter pylori strain Hpfe084]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCTTCTAGAGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAAGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGTGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTGGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.241

99.254

0.955