Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG19_RS00010 Genome accession   NZ_CP094094
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245066165.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe084     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG19_RS00005 (MPG19_00005) dnaA 1..1368 (+) 1368 WP_245066164.1 chromosomal replication initiator protein DnaA -
  MPG19_RS00010 (MPG19_00010) comH 1589..3028 (+) 1440 WP_245066165.1 competence protein Machinery gene
  MPG19_RS00020 (MPG19_00020) - 3205..3957 (+) 753 WP_000767562.1 exodeoxyribonuclease III -
  MPG19_RS00025 (MPG19_00025) - 3954..4589 (-) 636 WP_245066166.1 outer membrane protein -
  MPG19_RS00030 (MPG19_00030) - 4593..4946 (-) 354 WP_245066167.1 hypothetical protein -
  MPG19_RS00035 (MPG19_00035) recG 5028..6887 (+) 1860 WP_245066168.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54930.77 Da        Isoelectric Point: 7.0429

>NTDB_id=666746 MPG19_RS00010 WP_245066165.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe084]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHPHQMPSLNTPIQKPQNKPTSSQQSPQNFSYSESKLGSKNPKNSLLQPL
ATPSKISSANEVKTPTNDTKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNADTNEHNESNENRDNVEKQTIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRIDEYKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666746 MPG19_RS00010 WP_245066165.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe084]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCTACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACAACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
GTTGAAAGAGCCACACCCACACCAAATGCCTTCTTTAAACACGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAGCGCCACCCACTGAAAAAACGCTCCCTAACAATACCCCTAACGCTGATACTA
ATGAACACAATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAATACAAACA
GACTGCGACAGACATTACCCCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCGCAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGTAAAAGGGCCAGAGCACGAAAAGACGGCACAACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGTGAGTATGAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AGATAGAACCGACTTTTTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.484

100

0.925