Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF97_RS06880 Genome accession   NZ_CP094093
Coordinates   1446858..1448171 (-) Length   437 a.a.
NCBI ID   WP_245102337.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe085     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1441858..1453171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF97_RS06850 (MPF97_06850) nadC 1442321..1443142 (-) 822 WP_245102327.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF97_RS06855 (MPF97_06855) nadA 1443142..1444152 (-) 1011 WP_245102329.1 quinolinate synthase NadA -
  MPF97_RS06860 (MPF97_06860) - 1444142..1444945 (-) 804 WP_245102331.1 phosphatidylserine decarboxylase -
  MPF97_RS06865 (MPF97_06865) - 1444942..1445445 (-) 504 WP_245102333.1 helix-turn-helix domain-containing protein -
  MPF97_RS06870 (MPF97_06870) - 1445458..1445952 (-) 495 WP_245102335.1 hypothetical protein -
  MPF97_RS06875 (MPF97_06875) mqnP 1445945..1446829 (-) 885 WP_075645930.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF97_RS06880 (MPF97_06880) comEC/comE3 1446858..1448171 (-) 1314 WP_245102337.1 ComEC/Rec2 family competence protein Machinery gene
  MPF97_RS06885 (MPF97_06885) - 1448168..1449634 (-) 1467 WP_245102339.1 replicative DNA helicase -
  MPF97_RS06890 (MPF97_06890) - 1449645..1451039 (-) 1395 WP_245102341.1 NAD(P)H-hydrate dehydratase -
  MPF97_RS06895 (MPF97_06895) crdS 1451042..1452244 (-) 1203 WP_245103268.1 copper-sensing histidine kinase CrdS -
  MPF97_RS06900 (MPF97_06900) crdR 1452210..1452851 (-) 642 WP_245102343.1 copper response regulator transcription factor CrdR -
  MPF97_RS06905 (MPF97_06905) - 1452936..1453163 (-) 228 Protein_1350 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50078.13 Da        Isoelectric Point: 9.8515

>NTDB_id=666741 MPF97_RS06880 WP_245102337.1 1446858..1448171(-) (comEC/comE3) [Helicobacter pylori strain Hpfe085]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDLKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQTFFKTSSFLMRSFQVISLS
TLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666741 MPF97_RS06880 WP_245102337.1 1446858..1448171(-) (comEC/comE3) [Helicobacter pylori strain Hpfe085]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTAAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATCTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTGGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCAAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAGCACACTCAAACCTTTTTTAAAACCTCTTCTTTTTTGATGCGATCTTTTCAGGTCATAAGCTTAAGC
ACGCTGGTGTTTTTAAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947