Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG82_RS07005 Genome accession   NZ_CP094092
Coordinates   1455457..1456770 (-) Length   437 a.a.
NCBI ID   WP_245082273.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe086     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1450457..1461770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS06975 (MPG82_06975) nadC 1450920..1451741 (-) 822 WP_120918312.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG82_RS06980 (MPG82_06980) nadA 1451741..1452751 (-) 1011 WP_245082264.1 quinolinate synthase NadA -
  MPG82_RS06985 (MPG82_06985) - 1452738..1453544 (-) 807 WP_245082267.1 phosphatidylserine decarboxylase -
  MPG82_RS06990 (MPG82_06990) - 1453541..1454044 (-) 504 WP_245082269.1 helix-turn-helix domain-containing protein -
  MPG82_RS06995 (MPG82_06995) - 1454057..1454551 (-) 495 WP_171930327.1 hypothetical protein -
  MPG82_RS07000 (MPG82_07000) mqnP 1454544..1455386 (-) 843 WP_245082271.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG82_RS07005 (MPG82_07005) comEC/comE3 1455457..1456770 (-) 1314 WP_245082273.1 ComEC/Rec2 family competence protein Machinery gene
  MPG82_RS07010 (MPG82_07010) - 1456767..1458227 (-) 1461 WP_245082275.1 replicative DNA helicase -
  MPG82_RS07015 (MPG82_07015) - 1458238..1459632 (-) 1395 WP_245082278.1 NAD(P)H-hydrate dehydratase -
  MPG82_RS07020 (MPG82_07020) crdS 1459635..1460837 (-) 1203 WP_245083666.1 copper-sensing histidine kinase CrdS -
  MPG82_RS07025 (MPG82_07025) crdR 1460803..1461444 (-) 642 WP_001169803.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50117.09 Da        Isoelectric Point: 9.9068

>NTDB_id=666721 MPG82_RS07005 WP_245082273.1 1455457..1456770(-) (comEC/comE3) [Helicobacter pylori strain Hpfe086]
MKDKTFQGAFELLATPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKFQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLIRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFIFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
TLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDSILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666721 MPG82_RS07005 WP_245082273.1 1455457..1456770(-) (comEC/comE3) [Helicobacter pylori strain Hpfe086]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGTTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTCTAAAGTCATGCTTTTTTCAAACTTATTCTTTTTCTTTAATACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTATTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTATGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATTCCA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCACCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.593

100

0.936