Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG82_RS05410 Genome accession   NZ_CP094092
Coordinates   1127561..1127965 (-) Length   134 a.a.
NCBI ID   WP_245081805.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe086     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1122561..1132965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS05375 (MPG82_05375) - 1122805..1123926 (-) 1122 WP_245081794.1 hypothetical protein -
  MPG82_RS05380 (MPG82_05380) - 1123916..1124701 (-) 786 WP_245081796.1 hypothetical protein -
  MPG82_RS05385 (MPG82_05385) - 1124701..1125082 (-) 382 Protein_1045 DUF1294 domain-containing protein -
  MPG82_RS05390 (MPG82_05390) - 1125424..1125810 (-) 387 WP_245081799.1 lysozyme -
  MPG82_RS05395 (MPG82_05395) - 1126106..1126666 (-) 561 WP_245081801.1 hypothetical protein -
  MPG82_RS05400 (MPG82_05400) - 1126650..1126988 (-) 339 WP_180457157.1 hypothetical protein -
  MPG82_RS05405 (MPG82_05405) - 1127173..1127427 (-) 255 WP_245081803.1 sel1 repeat family protein -
  MPG82_RS05410 (MPG82_05410) dprB 1127561..1127965 (-) 405 WP_245081805.1 Holliday junction resolvase RuvX Machinery gene
  MPG82_RS05415 (MPG82_05415) dprA 1127962..1128762 (-) 801 WP_180446186.1 DNA-processing protein DprA Machinery gene
  MPG82_RS05420 (MPG82_05420) minE 1128774..1129007 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG82_RS05425 (MPG82_05425) minD 1129004..1129810 (-) 807 WP_245081809.1 septum site-determining protein MinD -
  MPG82_RS05430 (MPG82_05430) ilvC 1129835..1130827 (-) 993 WP_245081811.1 ketol-acid reductoisomerase -
  MPG82_RS05440 (MPG82_05440) - 1131076..1131858 (+) 783 WP_245081813.1 NAD+ synthase -
  MPG82_RS05445 (MPG82_05445) - 1131855..1132793 (+) 939 WP_245081815.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15353.88 Da        Isoelectric Point: 9.7396

>NTDB_id=666717 MPG82_RS05410 WP_245081805.1 1127561..1127965(-) (dprB) [Helicobacter pylori strain Hpfe086]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPHESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYYQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666717 MPG82_RS05410 WP_245081805.1 1127561..1127965(-) (dprB) [Helicobacter pylori strain Hpfe086]
GTGATTTTGGCATGCGATGTGGGGTTAAAGCGCATTGGGATCGCTGCACTTTTAAACGGCGTTATTTTGCCCTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCCATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAACATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGACTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.97

98.507

0.955