Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG82_RS00010 Genome accession   NZ_CP094092
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245082504.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe086     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG82_RS00005 (MPG82_00005) dnaA 1..1368 (+) 1368 WP_245082502.1 chromosomal replication initiator protein DnaA -
  MPG82_RS00010 (MPG82_00010) comH 1589..3022 (+) 1434 WP_245082504.1 competence protein Machinery gene
  MPG82_RS00020 (MPG82_00020) - 3200..3952 (+) 753 WP_058054782.1 exodeoxyribonuclease III -
  MPG82_RS00025 (MPG82_00025) - 3949..4584 (-) 636 WP_121296598.1 outer membrane protein -
  MPG82_RS00030 (MPG82_00030) - 4588..4947 (-) 360 WP_245082506.1 hypothetical protein -
  MPG82_RS00035 (MPG82_00035) recG 5029..6894 (+) 1866 WP_245082508.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54731.92 Da        Isoelectric Point: 8.1364

>NTDB_id=666705 MPG82_RS00010 WP_245082504.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe086]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKDTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPRNTQIVFSSKELKKPHQMPSLNAPIQKPQNKPTSSQQSLQNFPYIESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDIKPPLKHSSEDQENNLFVAPPTEKTLPNNTPNANINEHNKSNENRDNGEKQAIRDPNIKEFACG
KWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEVKQNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666705 MPG82_RS00010 WP_245082504.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe086]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAGGA
AATCAAAACTTCGCCGCATAAAGACACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAAAGCCACACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCTTCAAAACTTTCCTTACATAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCTGCTAATGAAGTTAAAACGCCAACAAACGACATTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTGTAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTAATATTAATGAAC
ACAATAAAAGCAATGAAAATAGGGATAATGGGGAAAAACAAGCCATTAGAGATCCTAATATCAAAGAATTTGCATGCGGG
AAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCACAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGTAAAAGGGCTAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAATAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAATTTG
AATGAAAAATTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGTTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

90.605

100

0.91