Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   OG806_RS10135 Genome accession   NZ_CP108797
Coordinates   2223916..2225271 (-) Length   451 a.a.
NCBI ID   WP_365119951.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00882     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2218916..2230271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG806_RS10115 (OG806_10105) - 2219908..2220234 (-) 327 WP_328637231.1 hypothetical protein -
  OG806_RS10120 (OG806_10110) - 2220245..2220670 (-) 426 WP_307073923.1 DUF948 domain-containing protein -
  OG806_RS10125 (OG806_10115) - 2220832..2222988 (+) 2157 WP_406155957.1 ATP-binding protein -
  OG806_RS10130 (OG806_10120) rpsD 2223019..2223633 (-) 615 WP_086766745.1 30S ribosomal protein S4 -
  OG806_RS10135 (OG806_10125) rarA 2223916..2225271 (-) 1356 WP_365119951.1 replication-associated recombination protein A Machinery gene
  OG806_RS10140 (OG806_10130) - 2225318..2225980 (-) 663 WP_328637234.1 vitamin K epoxide reductase family protein -
  OG806_RS10145 (OG806_10135) - 2226126..2226992 (+) 867 WP_406155958.1 ABC transporter ATP-binding protein -
  OG806_RS10150 (OG806_10140) - 2226989..2227834 (+) 846 WP_406155959.1 ABC transporter permease -
  OG806_RS10155 (OG806_10145) - 2227831..2229030 (+) 1200 WP_406164130.1 sensor histidine kinase -
  OG806_RS10160 (OG806_10150) - 2229027..2229650 (+) 624 WP_406155960.1 response regulator -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48231.76 Da        Isoelectric Point: 6.3816

>NTDB_id=666700 OG806_RS10135 WP_365119951.1 2223916..2225271(-) (rarA) [Streptomyces sp. NBC_00882]
MEPDLFTAAAEERQEKDPAGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLEPLTDDDVRGLLKRALSDERGLKGAVALPEDTEDHLLRIAGGDARRALTALEAAAGAALDKGEPE
ITLTTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAAMEDVRKGLAGPVPPHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAEQQYAPDAIKDRAYYEPTRHGAEARYADAVEWTRKHLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=666700 OG806_RS10135 WP_365119951.1 2223916..2225271(-) (rarA) [Streptomyces sp. NBC_00882]
GTGGAGCCCGATCTGTTCACCGCCGCGGCAGAAGAACGCCAGGAGAAGGACCCGGCCGGCAGCCCCCTGGCGGTCCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGCCAGCAGCACCTGCTCAAGCCGGGTTCGCCGCTGCGCCGACTGGTCGGCG
AGGGCAGCGGCGGTCCCGCCGGACCGTCCTCGGTGATCCTCTGGGGCCCGCCCGGCACCGGCAAGACGACCCTGGCCTAC
GTCGTCTCCAAGGCCACCAACAAGCGCTTCGTGGAGCTCTCCGCGATCACCGCCGGCGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCCGCGGTCGAGAACCGCTGGGTGACCCTGATCGCGGCGACCACCGAGAACCCGTACTTC
TCGATCATCTCCCCGTTGCTGTCCCGGTCCCTGCTGCTGACCCTCGAACCCCTCACCGACGACGACGTCAGAGGACTGCT
GAAGCGGGCGCTGAGCGACGAGCGCGGCCTGAAGGGCGCCGTCGCCCTCCCCGAGGACACCGAGGACCACCTCCTGCGGA
TCGCCGGCGGCGACGCCCGCCGTGCCCTGACCGCCCTGGAGGCCGCCGCCGGGGCAGCCCTCGACAAGGGCGAGCCGGAG
ATCACCCTCACCACGCTGGAGGAGACGGTCGACCGCGCGGCCGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCCATCAGGGGCTCCGACGTCGACGCTGCCCTGCACTACCTGGCCCGCATGATCGAGGCCG
GTGAGGACCCCCGCTTCATCGCCCGCCGGCTGATGATCTCCGCCAGCGAGGACATCGGCCTCGCCGACCCGAACGCCCTG
CCCATCGCGGTCGCCGCCGCCCAGGCCGTGGCGATGATCGGCTTCCCCGAGGCCGCGCTCACATTGAGCCACGCCACCAT
CGCGCTCGCCCTGGCCCCCAAGTCCAACGCCGCGACGACGGCGATCGGCGCGGCCATGGAGGACGTACGCAAGGGGCTGG
CCGGGCCGGTACCGCCGCATCTGCGCGACGGGCACTACAAAGGCGCCGCCAAGCTCGGGCACGCGCAGGGGTACGTGTAC
CCGCACGACCTGCCCGAGGGGATCGCCGAGCAGCAGTACGCCCCGGACGCCATCAAGGACCGTGCGTACTACGAACCCAC
CCGGCACGGCGCCGAGGCCCGGTACGCGGACGCCGTGGAGTGGACCCGCAAACACCTCGGTCGCAAGCGGTCCTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(199-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.111

96.009

0.424