Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF86_RS06875 Genome accession   NZ_CP094091
Coordinates   1430217..1431530 (-) Length   437 a.a.
NCBI ID   WP_245064239.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe088     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425217..1436530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF86_RS06845 (MPF86_06845) nadC 1425680..1426501 (-) 822 WP_245064232.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF86_RS06850 (MPF86_06850) nadA 1426501..1427511 (-) 1011 WP_245064235.1 quinolinate synthase NadA -
  MPF86_RS06855 (MPF86_06855) - 1427501..1428304 (-) 804 WP_000561100.1 phosphatidylserine decarboxylase -
  MPF86_RS06860 (MPF86_06860) - 1428301..1428804 (-) 504 WP_245064237.1 helix-turn-helix domain-containing protein -
  MPF86_RS06865 (MPF86_06865) - 1428817..1429311 (-) 495 WP_180602988.1 hypothetical protein -
  MPF86_RS06870 (MPF86_06870) mqnP 1429304..1430188 (-) 885 WP_120991999.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF86_RS06875 (MPF86_06875) comEC/comE3 1430217..1431530 (-) 1314 WP_245064239.1 ComEC/Rec2 family competence protein Machinery gene
  MPF86_RS06880 (MPF86_06880) - 1431527..1432987 (-) 1461 WP_245064241.1 replicative DNA helicase -
  MPF86_RS06885 (MPF86_06885) - 1432998..1434392 (-) 1395 WP_245064243.1 NAD(P)H-hydrate dehydratase -
  MPF86_RS06890 (MPF86_06890) crdS 1434395..1435597 (-) 1203 WP_245065322.1 copper-sensing histidine kinase CrdS -
  MPF86_RS06895 (MPF86_06895) crdR 1435563..1436204 (-) 642 WP_154433930.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50178.13 Da        Isoelectric Point: 9.8515

>NTDB_id=666700 MPF86_RS06875 WP_245064239.1 1430217..1431530(-) (comEC/comE3) [Helicobacter pylori strain Hpfe088]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLILNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKIKSCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSVLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKFLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666700 MPF86_RS06875 WP_245064239.1 1430217..1431530(-) (comEC/comE3) [Helicobacter pylori strain Hpfe088]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAATACTCAATCTTTATTTAGAATACTTAAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAGTACCGCCATGCGCAATTTTTTGGCAAAATCAAATCTTGCTC
ATTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGTTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGTTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GCACTAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTATTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGTGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947