Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF86_RS05405 Genome accession   NZ_CP094091
Coordinates   1127907..1128311 (-) Length   134 a.a.
NCBI ID   WP_245063798.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe088     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1122907..1133311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF86_RS05365 (MPF86_05365) - 1123103..1124179 (-) 1077 WP_245063786.1 hypothetical protein -
  MPF86_RS05370 (MPF86_05370) - 1124169..1124954 (-) 786 WP_245063788.1 hypothetical protein -
  MPF86_RS05375 (MPF86_05375) - 1124954..1125340 (-) 387 WP_245065295.1 DUF1294 domain-containing protein -
  MPF86_RS05380 (MPF86_05380) - 1125669..1125935 (-) 267 WP_140577016.1 lysozyme -
  MPF86_RS05385 (MPF86_05385) - 1126348..1126908 (-) 561 WP_245063792.1 hypothetical protein -
  MPF86_RS05390 (MPF86_05390) - 1126892..1127230 (-) 339 WP_089482812.1 hypothetical protein -
  MPF86_RS05395 (MPF86_05395) - 1127414..1127617 (-) 204 WP_245063794.1 sel1 repeat family protein -
  MPF86_RS05400 (MPF86_05400) - 1127652..1127849 (-) 198 WP_245063796.1 hypothetical protein -
  MPF86_RS05405 (MPF86_05405) dprB 1127907..1128311 (-) 405 WP_245063798.1 Holliday junction resolvase RuvX Machinery gene
  MPF86_RS05410 (MPF86_05410) dprA 1128308..1129108 (-) 801 WP_245063799.1 DNA-processing protein DprA Machinery gene
  MPF86_RS05415 (MPF86_05415) minE 1129120..1129353 (-) 234 WP_212874147.1 cell division topological specificity factor MinE -
  MPF86_RS05420 (MPF86_05420) minD 1129350..1130156 (-) 807 WP_245063801.1 septum site-determining protein MinD -
  MPF86_RS05425 (MPF86_05425) ilvC 1130180..1131172 (-) 993 WP_245063803.1 ketol-acid reductoisomerase -
  MPF86_RS05435 (MPF86_05435) - 1131421..1132203 (+) 783 WP_245063805.1 NAD+ synthase -
  MPF86_RS05440 (MPF86_05440) - 1132200..1133138 (+) 939 WP_245063807.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15212.77 Da        Isoelectric Point: 8.3463

>NTDB_id=666696 MPF86_RS05405 WP_245063798.1 1127907..1128311(-) (dprB) [Helicobacter pylori strain Hpfe088]
MILACDVGLKCIGIAMLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666696 MPF86_RS05405 WP_245063798.1 1127907..1128311(-) (dprB) [Helicobacter pylori strain Hpfe088]
GTGATTTTGGCATGCGATGTGGGGCTGAAGTGCATTGGGATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGACTTTAAGGGAGAA
ATCGTTTTTATTAATGAAGACAGATCTAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.697

98.507

0.933