Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF90_RS07195 Genome accession   NZ_CP094090
Coordinates   1496574..1497887 (-) Length   437 a.a.
NCBI ID   WP_245022953.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe089     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1491574..1502887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF90_RS07165 (MPF90_07165) nadC 1492037..1492858 (-) 822 WP_245022949.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF90_RS07170 (MPF90_07170) nadA 1492858..1493868 (-) 1011 WP_245022950.1 quinolinate synthase NadA -
  MPF90_RS07175 (MPF90_07175) - 1493855..1494661 (-) 807 WP_053460108.1 phosphatidylserine decarboxylase -
  MPF90_RS07180 (MPF90_07180) - 1494658..1495161 (-) 504 WP_000953102.1 hypothetical protein -
  MPF90_RS07185 (MPF90_07185) - 1495174..1495668 (-) 495 WP_245022951.1 hypothetical protein -
  MPF90_RS07190 (MPF90_07190) mqnP 1495661..1496545 (-) 885 WP_245022952.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF90_RS07195 (MPF90_07195) comEC/comE3 1496574..1497887 (-) 1314 WP_245022953.1 ComEC/Rec2 family competence protein Machinery gene
  MPF90_RS07200 (MPF90_07200) - 1497884..1499344 (-) 1461 WP_245022954.1 replicative DNA helicase -
  MPF90_RS07205 (MPF90_07205) - 1499355..1500749 (-) 1395 WP_245022955.1 NAD(P)H-hydrate dehydratase -
  MPF90_RS07210 (MPF90_07210) crdS 1500752..1501954 (-) 1203 WP_245023444.1 copper-sensing histidine kinase CrdS -
  MPF90_RS07215 (MPF90_07215) crdR 1501920..1502561 (-) 642 WP_245022956.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50113.00 Da        Isoelectric Point: 9.8515

>NTDB_id=666680 MPF90_RS07195 WP_245022953.1 1496574..1497887(-) (comEC/comE3) [Helicobacter pylori strain Hpfe089]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGII
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKNSSFLARSFQVISLS
AIVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666680 MPF90_RS07195 WP_245022953.1 1496574..1497887(-) (comEC/comE3) [Helicobacter pylori strain Hpfe089]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTCAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATAATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAATCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGTGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTATTGGCTATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ACGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAAACTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGT
GCGATAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954