Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF90_RS05695 Genome accession   NZ_CP094090
Coordinates   1191201..1191605 (-) Length   134 a.a.
NCBI ID   WP_096482564.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1186201..1196605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF90_RS05660 (MPF90_05660) - 1187009..1187794 (-) 786 WP_245022796.1 hypothetical protein -
  MPF90_RS05665 (MPF90_05665) - 1187794..1188180 (-) 387 WP_180406802.1 DUF1294 domain-containing protein -
  MPF90_RS05670 (MPF90_05670) - 1188518..1189174 (-) 657 WP_342368795.1 lysozyme -
  MPF90_RS05675 (MPF90_05675) - 1189203..1189769 (-) 567 WP_180406803.1 hypothetical protein -
  MPF90_RS05680 (MPF90_05680) - 1189753..1190091 (-) 339 WP_017280149.1 hypothetical protein -
  MPF90_RS05685 (MPF90_05685) - 1190222..1190845 (-) 624 WP_245022798.1 tetratricopeptide repeat protein -
  MPF90_RS05690 (MPF90_05690) - 1190859..1191071 (-) 213 WP_245022799.1 hypothetical protein -
  MPF90_RS05695 (MPF90_05695) dprB 1191201..1191605 (-) 405 WP_096482564.1 Holliday junction resolvase RuvX Machinery gene
  MPF90_RS05700 (MPF90_05700) dprA 1191602..1192402 (-) 801 WP_245022800.1 DNA-processing protein DprA Machinery gene
  MPF90_RS05705 (MPF90_05705) minE 1192414..1192647 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF90_RS05710 (MPF90_05710) minD 1192644..1193450 (-) 807 WP_245022801.1 septum site-determining protein MinD -
  MPF90_RS05715 (MPF90_05715) ilvC 1193474..1194466 (-) 993 WP_245022802.1 ketol-acid reductoisomerase -
  MPF90_RS05725 (MPF90_05725) - 1194714..1195496 (+) 783 WP_245022803.1 NAD+ synthase -
  MPF90_RS05730 (MPF90_05730) - 1195493..1196431 (+) 939 WP_245022804.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15266.73 Da        Isoelectric Point: 8.7193

>NTDB_id=666676 MPF90_RS05695 WP_096482564.1 1191201..1191605(-) (dprB) [Helicobacter pylori strain Hpfe089]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666676 MPF90_RS05695 WP_096482564.1 1191201..1191605(-) (dprB) [Helicobacter pylori strain Hpfe089]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCACTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGAGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

96.992

99.254

0.963