Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPF90_RS00010 Genome accession   NZ_CP094090
Coordinates   1590..3023 (+) Length   477 a.a.
NCBI ID   WP_245023018.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe089     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF90_RS00005 (MPF90_00005) dnaA 1..1368 (+) 1368 WP_245023017.1 chromosomal replication initiator protein DnaA -
  MPF90_RS00010 (MPF90_00010) comH 1590..3023 (+) 1434 WP_245023018.1 competence protein Machinery gene
  MPF90_RS00020 (MPF90_00020) - 3201..3953 (+) 753 WP_000767569.1 exodeoxyribonuclease III -
  MPF90_RS00025 (MPF90_00025) - 3950..4585 (-) 636 WP_000668051.1 outer membrane protein -
  MPF90_RS00030 (MPF90_00030) - 4589..4942 (-) 354 WP_245023019.1 hypothetical protein -
  MPF90_RS00035 (MPF90_00035) recG 5024..6889 (+) 1866 WP_245023020.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54682.53 Da        Isoelectric Point: 6.9523

>NTDB_id=666664 MPF90_RS00010 WP_245023018.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe089]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSPQNFSYSESKLGSKNPKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNANINEYNESNENRDNVEKQTIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTIRQCYLIEEPLKQAWESEYEITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNELNL
NEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666664 MPF90_RS00010 WP_245023018.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe089]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACACTCACAATCACTCACATATCCACTGCAATTGTCTATCAACCTCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTATAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACTCCTAACGCTAATATTAATGAAT
ACAATGAAAGCAATGAAAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGAGCCAGAGCGCGAAAAGACGGCACGATTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATGAAATCACCACGCAGTTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.693

100

0.931

Multiple sequence alignment