Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG40_RS07330 Genome accession   NZ_CP094088
Coordinates   1526065..1526346 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe092     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1521065..1531346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG40_RS07310 (MPG40_07310) - 1521776..1523206 (-) 1431 WP_245063628.1 COG3014 family protein -
  MPG40_RS07320 (MPG40_07320) comB4 1523436..1525799 (-) 2364 WP_245063630.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG40_RS07325 (MPG40_07325) comB3 1525802..1526065 (-) 264 WP_048944994.1 hypothetical protein Machinery gene
  MPG40_RS07330 (MPG40_07330) comB2 1526065..1526346 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG40_RS07335 (MPG40_07335) - 1526491..1527318 (-) 828 WP_245063632.1 DUF5718 family protein -
  MPG40_RS07340 (MPG40_07340) - 1527409..1528461 (-) 1053 WP_245063634.1 MnmA/TRMU family protein -
  MPG40_RS07345 (MPG40_07345) dnaG 1528458..1530137 (-) 1680 WP_245063636.1 DNA primase -
  MPG40_RS07350 (MPG40_07350) groES 1530412..1530768 (+) 357 WP_245063638.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666663 MPG40_RS07330 WP_001272686.1 1526065..1526346(-) (comB2) [Helicobacter pylori strain Hpfe092]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666663 MPG40_RS07330 WP_001272686.1 1526065..1526346(-) (comB2) [Helicobacter pylori strain Hpfe092]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTTTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment