Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   MPG40_RS07325 Genome accession   NZ_CP094088
Coordinates   1525802..1526065 (-) Length   87 a.a.
NCBI ID   WP_048944994.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe092     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1520802..1531065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG40_RS07310 (MPG40_07310) - 1521776..1523206 (-) 1431 WP_245063628.1 COG3014 family protein -
  MPG40_RS07320 (MPG40_07320) comB4 1523436..1525799 (-) 2364 WP_245063630.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG40_RS07325 (MPG40_07325) comB3 1525802..1526065 (-) 264 WP_048944994.1 hypothetical protein Machinery gene
  MPG40_RS07330 (MPG40_07330) comB2 1526065..1526346 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG40_RS07335 (MPG40_07335) - 1526491..1527318 (-) 828 WP_245063632.1 DUF5718 family protein -
  MPG40_RS07340 (MPG40_07340) - 1527409..1528461 (-) 1053 WP_245063634.1 MnmA/TRMU family protein -
  MPG40_RS07345 (MPG40_07345) dnaG 1528458..1530137 (-) 1680 WP_245063636.1 DNA primase -
  MPG40_RS07350 (MPG40_07350) groES 1530412..1530768 (+) 357 WP_245063638.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10090.20 Da        Isoelectric Point: 9.5507

>NTDB_id=666662 MPG40_RS07325 WP_048944994.1 1525802..1526065(-) (comB3) [Helicobacter pylori strain Hpfe092]
MIILSASVKNLREISVKEKFLWLNAKSYLISIFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIIARSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=666662 MPG40_RS07325 WP_048944994.1 1525802..1526065(-) (comB3) [Helicobacter pylori strain Hpfe092]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTATTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTATTGCTAGAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

95.402

100

0.954

Multiple sequence alignment