Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG40_RS07190 Genome accession   NZ_CP094088
Coordinates   1492878..1494191 (-) Length   437 a.a.
NCBI ID   WP_245063596.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe092     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487878..1499191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG40_RS07160 (MPG40_07160) nadC 1488341..1489162 (-) 822 WP_021301544.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG40_RS07165 (MPG40_07165) nadA 1489162..1490172 (-) 1011 WP_245063590.1 quinolinate synthase NadA -
  MPG40_RS07170 (MPG40_07170) - 1490162..1490965 (-) 804 WP_245063592.1 phosphatidylserine decarboxylase -
  MPG40_RS07175 (MPG40_07175) - 1490962..1491465 (-) 504 WP_000953102.1 hypothetical protein -
  MPG40_RS07180 (MPG40_07180) - 1491478..1491972 (-) 495 WP_001867294.1 hypothetical protein -
  MPG40_RS07185 (MPG40_07185) mqnP 1491965..1492849 (-) 885 WP_245063595.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG40_RS07190 (MPG40_07190) comEC/comE3 1492878..1494191 (-) 1314 WP_245063596.1 ComEC/Rec2 family competence protein Machinery gene
  MPG40_RS07195 (MPG40_07195) - 1494188..1495654 (-) 1467 WP_245063598.1 replicative DNA helicase -
  MPG40_RS07200 (MPG40_07200) - 1495665..1497065 (-) 1401 WP_245063600.1 NAD(P)H-hydrate dehydratase -
  MPG40_RS07205 (MPG40_07205) crdS 1497068..1498270 (-) 1203 WP_245064480.1 copper-sensing histidine kinase CrdS -
  MPG40_RS07210 (MPG40_07210) crdR 1498236..1498877 (-) 642 WP_245063602.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50107.15 Da        Isoelectric Point: 9.8368

>NTDB_id=666659 MPG40_RS07190 WP_245063596.1 1492878..1494191(-) (comEC/comE3) [Helicobacter pylori strain Hpfe092]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHVRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
ALVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666659 MPG40_RS07190 WP_245063596.1 1492878..1494191(-) (comEC/comE3) [Helicobacter pylori strain Hpfe092]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTCTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGACAGCGCCCATTCAAGCGCTTTAGTGGGTAATTTATACCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACTTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
GCGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGCTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAATGATTCCTACGATTTCGGTTTTTTCGCCTTTGTGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.966

100

0.95