Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG40_RS05680 Genome accession   NZ_CP094088
Coordinates   1185339..1185743 (-) Length   134 a.a.
NCBI ID   WP_245063362.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1180339..1190743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG40_RS05635 (MPG40_05635) - 1180527..1181594 (-) 1068 Protein_1104 hypothetical protein -
  MPG40_RS05640 (MPG40_05640) - 1181584..1182372 (-) 789 WP_245063357.1 hypothetical protein -
  MPG40_RS05645 (MPG40_05645) - 1182372..1182753 (-) 382 Protein_1106 DUF1294 domain-containing protein -
  MPG40_RS05650 (MPG40_05650) - 1182841..1183008 (-) 168 WP_245064494.1 hypothetical protein -
  MPG40_RS05655 (MPG40_05655) - 1183097..1183258 (-) 162 WP_245063358.1 lysozyme -
  MPG40_RS05660 (MPG40_05660) - 1183278..1183772 (-) 495 WP_245063359.1 lysozyme -
  MPG40_RS05665 (MPG40_05665) - 1183783..1184343 (-) 561 WP_245063360.1 hypothetical protein -
  MPG40_RS05670 (MPG40_05670) - 1184327..1184665 (-) 339 WP_245063361.1 hypothetical protein -
  MPG40_RS05675 (MPG40_05675) - 1184854..1185183 (-) 330 WP_280636115.1 tetratricopeptide repeat protein -
  MPG40_RS05680 (MPG40_05680) dprB 1185339..1185743 (-) 405 WP_245063362.1 Holliday junction resolvase RuvX Machinery gene
  MPG40_RS05685 (MPG40_05685) dprA 1185740..1186540 (-) 801 WP_058339071.1 DNA-processing protein DprA Machinery gene
  MPG40_RS05690 (MPG40_05690) minE 1186552..1186785 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG40_RS05695 (MPG40_05695) minD 1186782..1187588 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG40_RS05700 (MPG40_05700) ilvC 1187613..1188605 (-) 993 WP_245063363.1 ketol-acid reductoisomerase -
  MPG40_RS05710 (MPG40_05710) - 1188853..1189635 (+) 783 WP_245063364.1 NAD+ synthase -
  MPG40_RS05715 (MPG40_05715) - 1189632..1190570 (+) 939 WP_245063365.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15224.85 Da        Isoelectric Point: 9.2303

>NTDB_id=666655 MPG40_RS05680 WP_245063362.1 1185339..1185743(-) (dprB) [Helicobacter pylori strain Hpfe092]
MILACDVGLKRIGIAMLLNGIILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYTDTNACIEHFIKLLDFKGE
IVLINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666655 MPG40_RS05680 WP_245063362.1 1185339..1185743(-) (dprB) [Helicobacter pylori strain Hpfe092]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCATTATTTTACCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATACGGACACGAACGCGTGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATTGTTTTGATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGCAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.182

98.507

0.918