Detailed information NTG0666645

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: MPG40_RS00910
• Genome accession: NZ_CP094088
• Coordinates: 193464..194519 (+)
• Length: 351 a.a.
• NCBI ID: WP_245063915.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain Hpfe092
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 188464..199519

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MPG40_RS00880 (MPG40_00880)	-	188889..189302 (+)	414	WP_001023008.1	universal stress protein	-
MPG40_RS00885 (MPG40_00885)	-	189322..189597 (+)	276	WP_000784960.1	ATP-dependent Clp protease adaptor ClpS	-
MPG40_RS00890 (MPG40_00890)	-	189597..191819 (+)	2223	WP_245063913.1	ATP-dependent Clp protease ATP-binding subunit	-
MPG40_RS00895 (MPG40_00895)	panD	191809..192159 (+)	351	WP_050833161.1	aspartate 1-decarboxylase	-
MPG40_RS00900 (MPG40_00900)	-	192170..192463 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
MPG40_RS00905 (MPG40_00905)	-	192463..193458 (+)	996	WP_245064424.1	PDZ domain-containing protein	-
MPG40_RS00910 (MPG40_00910)	comB6	193464..194519 (+)	1056	WP_245063915.1	P-type conjugative transfer protein TrbL	Machinery gene
MPG40_RS00915 (MPG40_00915)	comB7	194535..194660 (+)	126	WP_001217867.1	hypothetical protein	Machinery gene
MPG40_RS00920 (MPG40_00920)	comB8	194657..195400 (+)	744	WP_245063917.1	virB8 family protein	Machinery gene
MPG40_RS00925 (MPG40_00925)	comB9	195400..196365 (+)	966	WP_245063919.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
MPG40_RS00930 (MPG40_00930)	comB10	196358..197494 (+)	1137	WP_245063921.1	DNA type IV secretion system protein ComB10	Machinery gene
MPG40_RS00935 (MPG40_00935)	-	197564..198976 (+)	1413	WP_245063923.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39901.91 Da
• Isoelectric Point: 8.8165

>NTDB_id=666645 MPG40_RS00910 WP_245063915.1 193464..194519(+) (comB6) [Helicobacter pylori strain Hpfe092]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSASVLTEALMFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSTSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=666645 MPG40_RS00910 WP_245063915.1 193464..194519(+) (comB6) [Helicobacter pylori strain Hpfe092]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTTGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCGCTAGCGTGCTAACAGAAGCGTTAATGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTATGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATTATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTATTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTACTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	97.151	100	0.972