Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG40_RS00010 Genome accession   NZ_CP094088
Coordinates   1623..3026 (+) Length   467 a.a.
NCBI ID   WP_245064490.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe092     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG40_RS00005 (MPG40_00005) dnaA 1..1368 (+) 1368 WP_126130667.1 chromosomal replication initiator protein DnaA -
  MPG40_RS00010 (MPG40_00010) comH 1623..3026 (+) 1404 WP_245064490.1 competence protein Machinery gene
  MPG40_RS00020 (MPG40_00020) - 3204..3956 (+) 753 WP_075653384.1 exodeoxyribonuclease III -
  MPG40_RS00025 (MPG40_00025) - 3953..4588 (-) 636 WP_000668030.1 outer membrane protein -
  MPG40_RS00030 (MPG40_00030) - 4592..4945 (-) 354 WP_120928430.1 hypothetical protein -
  MPG40_RS00035 (MPG40_00035) recG 5027..6892 (+) 1866 WP_245063742.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 53517.08 Da        Isoelectric Point: 6.7688

>NTDB_id=666640 MPG40_RS00010 WP_245064490.1 1623..3026(+) (comH) [Helicobacter pylori strain Hpfe092]
MTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDEKLSLETTLNP
NRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSPQNFSYTESKLSSKNPRNSLLQPLATPSKISSANEV
KTPTNDTKPPLKHTSEDQENNLFVAPPTEKTLPNNTPNADTNEHNESNENRDNVEKQTIRDPNVKEFACGKWVYDDENLQ
AYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSSTEKCKRARAR
KDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETNELAYSSTRKSEVKQNELNLNDKFMEFVEV
YEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCIKKGNYLFNEV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=666640 MPG40_RS00010 WP_245064490.1 1623..3026(+) (comH) [Helicobacter pylori strain Hpfe092]
CTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGAAATCAAAACTTCGCCGCATAAAGGCACTTT
TAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTTATAATATCTCCCCACACAAAAAACTCACGC
TCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAAAAACTTTCTTTAGAAACGACCTTAAACCCT
AACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGAATTGAAAGAGCCGCACCAAATGCCTTCTTT
AAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCACAACAATCTCCTCAAAACTTTTCTTACACAGAGTCCA
AACTAAGCTCTAAAAACCCTAGAAACAGCCTTTTACAACCTTTAGCTACTCCTAGTAAAATAAGCTCCGCTAATGAAGTT
AAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATACTTCAGAAGATCAAGAAAACAACCTCTTTGTAGCGCCACC
CACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTAATGAACACAATGAAAGCAATGAGAATAGGGATAATG
TGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGGAAGTGGGTCTATGATGATGAAAATTTACAA
GCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACAGACTGCGACAGACATTACCCCTTGCGACTACAGCAA
CGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTGTTCATAAAACAGAGCCTTTAGAAGAACCGC
AAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGAAGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGA
AAAGACGGCACGACCAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACAAGCGTGGGAGAGCGAGTATCAAATCACCAC
GCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAATAGAGCCGACTTTCTATGAAACCAACGAATTGG
CTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAATTTGAATGATAAGTTCATGGAATTTGTGGAAGTG
TATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAAAGAATGGGTTAAAAACCATGTGCGTTTAAA
AGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTG
TTGTTTGCATTAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

90.192

100

0.906