Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG15_RS07080 Genome accession   NZ_CP094087
Coordinates   1477928..1479241 (-) Length   437 a.a.
NCBI ID   WP_245079350.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe093     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1472928..1484241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG15_RS07050 (MPG15_07050) nadC 1473391..1474212 (-) 822 WP_231225532.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG15_RS07055 (MPG15_07055) nadA 1474212..1475222 (-) 1011 WP_245079346.1 quinolinate synthase NadA -
  MPG15_RS07060 (MPG15_07060) - 1475212..1476015 (-) 804 WP_245079347.1 phosphatidylserine decarboxylase -
  MPG15_RS07065 (MPG15_07065) - 1476012..1476515 (-) 504 WP_000953083.1 hypothetical protein -
  MPG15_RS07070 (MPG15_07070) - 1476528..1477022 (-) 495 WP_245079348.1 hypothetical protein -
  MPG15_RS07075 (MPG15_07075) mqnP 1477015..1477857 (-) 843 WP_245079349.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG15_RS07080 (MPG15_07080) comEC/comE3 1477928..1479241 (-) 1314 WP_245079350.1 ComEC/Rec2 family competence protein Machinery gene
  MPG15_RS07085 (MPG15_07085) - 1479238..1480698 (-) 1461 WP_245079351.1 replicative DNA helicase -
  MPG15_RS07090 (MPG15_07090) - 1480709..1482103 (-) 1395 WP_245079352.1 NAD(P)H-hydrate dehydratase -
  MPG15_RS07095 (MPG15_07095) crdS 1482106..1483308 (-) 1203 WP_245080007.1 copper-sensing histidine kinase CrdS -
  MPG15_RS07100 (MPG15_07100) crdR 1483274..1483915 (-) 642 WP_001169818.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50129.18 Da        Isoelectric Point: 9.8918

>NTDB_id=666635 MPG15_RS07080 WP_245079350.1 1477928..1479241(-) (comEC/comE3) [Helicobacter pylori strain Hpfe093]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESIRSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFLGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSLQVISLS
VLIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWFLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666635 MPG15_RS07080 WP_245079350.1 1477928..1479241(-) (comEC/comE3) [Helicobacter pylori strain Hpfe093]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACCAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTATAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGTGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTGGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTCTTCAGGTCATAAGCTTAAGC
GTGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGCCTTTATGGTTTTTGGGGGCGCATTTATTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.135

100

0.931