Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG15_RS00010 Genome accession   NZ_CP094087
Coordinates   1589..3022 (+) Length   477 a.a.
NCBI ID   WP_245079415.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe093     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG15_RS00005 (MPG15_00005) dnaA 1..1368 (+) 1368 WP_245079414.1 chromosomal replication initiator protein DnaA -
  MPG15_RS00010 (MPG15_00010) comH 1589..3022 (+) 1434 WP_245079415.1 competence protein Machinery gene
  MPG15_RS00020 (MPG15_00020) - 3200..3952 (+) 753 WP_108304297.1 exodeoxyribonuclease III -
  MPG15_RS00025 (MPG15_00025) - 3949..4584 (-) 636 WP_000668030.1 outer membrane protein -
  MPG15_RS00030 (MPG15_00030) - 4588..4941 (-) 354 WP_245079416.1 hypothetical protein -
  MPG15_RS00035 (MPG15_00035) recG 5023..6888 (+) 1866 WP_245079417.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54811.74 Da        Isoelectric Point: 7.4338

>NTDB_id=666619 MPG15_RS00010 WP_245079415.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe093]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSPQNFSYLEPKLGSKNSKNSLLQPLAT
PNKISSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNADINEHHESNENRDNAEKQTIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITSCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARVRKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNELNL
NEKFMEFVEVYERHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666619 MPG15_RS00010 WP_245079415.1 1589..3022(+) (comH) [Helicobacter pylori strain Hpfe093]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAAGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCTCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
GTTGAAAGAGCCACACCAAATGCCTTCTTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCCTCAAAACTTTTCTTACCTAGAACCCAAACTAGGCTCTAAAAACTCTAAAAACAGCCTTTTACAGCCTTTAGCCACT
CCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTTTTTATAGCACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTAATGAAC
ACCATGAAAGCAATGAAAATAGGGATAATGCGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCGTGTGGG
AAGTGGGTCTATGACGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
GACAGACATTACCTCTTGCGATTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAACCACAAACCTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGTTCT
ACAGAAAAATGCAAAAGGGCCAGAGTGCGAAAAGACGGCACGACTAGGCAATGCTATCTCATAGAAGAGCCTTTAAAACA
AGCATGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAACAG
AACCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAATTTG
AATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGAGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCTAAAA
GCACGCCTTTGAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.441

100

0.918