Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG64_RS07040 Genome accession   NZ_CP094085
Coordinates   1471066..1472379 (-) Length   437 a.a.
NCBI ID   WP_245076120.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe095     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466066..1477379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG64_RS07010 (MPG64_07010) nadC 1466529..1467350 (-) 822 WP_245076116.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG64_RS07015 (MPG64_07015) nadA 1467350..1468360 (-) 1011 WP_245076118.1 quinolinate synthase NadA -
  MPG64_RS07020 (MPG64_07020) - 1468350..1469153 (-) 804 WP_000561100.1 phosphatidylserine decarboxylase -
  MPG64_RS07025 (MPG64_07025) - 1469150..1469653 (-) 504 WP_000953083.1 hypothetical protein -
  MPG64_RS07030 (MPG64_07030) - 1469666..1470160 (-) 495 WP_162966390.1 hypothetical protein -
  MPG64_RS07035 (MPG64_07035) mqnP 1470153..1471037 (-) 885 WP_212901635.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG64_RS07040 (MPG64_07040) comEC/comE3 1471066..1472379 (-) 1314 WP_245076120.1 ComEC/Rec2 family competence protein Machinery gene
  MPG64_RS07045 (MPG64_07045) - 1472376..1473842 (-) 1467 WP_245076122.1 replicative DNA helicase -
  MPG64_RS07050 (MPG64_07050) - 1473853..1475247 (-) 1395 WP_245076124.1 NAD(P)H-hydrate dehydratase -
  MPG64_RS07055 (MPG64_07055) crdS 1475250..1476452 (-) 1203 WP_245077133.1 copper-sensing histidine kinase CrdS -
  MPG64_RS07060 (MPG64_07060) crdR 1476418..1477059 (-) 642 WP_033586629.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50044.04 Da        Isoelectric Point: 9.8515

>NTDB_id=666614 MPG64_RS07040 WP_245076120.1 1471066..1472379(-) (comEC/comE3) [Helicobacter pylori strain Hpfe095]
MKDKTFQGAFELLTTPKEYLVCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKISSFLVRSFQVISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666614 MPG64_RS07040 WP_245076120.1 1471066..1472379(-) (comEC/comE3) [Helicobacter pylori strain Hpfe095]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACCTGGTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCACTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAACCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCCCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAATCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.652

100

0.957