Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG64_RS02180 Genome accession   NZ_CP094085
Coordinates   454412..454816 (+) Length   134 a.a.
NCBI ID   WP_245076703.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 449412..459816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG64_RS02145 (MPG64_02145) - 449591..450529 (-) 939 WP_245076698.1 tetraacyldisaccharide 4'-kinase -
  MPG64_RS02150 (MPG64_02150) - 450526..451308 (-) 783 WP_050851280.1 NAD+ synthase -
  MPG64_RS02160 (MPG64_02160) ilvC 451556..452548 (+) 993 WP_245077062.1 ketol-acid reductoisomerase -
  MPG64_RS02165 (MPG64_02165) minD 452567..453373 (+) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG64_RS02170 (MPG64_02170) minE 453370..453603 (+) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG64_RS02175 (MPG64_02175) dprA 453615..454415 (+) 801 WP_245076701.1 DNA-processing protein DprA Machinery gene
  MPG64_RS02180 (MPG64_02180) dprB 454412..454816 (+) 405 WP_245076703.1 Holliday junction resolvase RuvX Machinery gene
  MPG64_RS02185 (MPG64_02185) - 454943..455257 (+) 315 WP_245076705.1 hypothetical protein -
  MPG64_RS02190 (MPG64_02190) - 455377..455820 (+) 444 WP_245076707.1 tetratricopeptide repeat protein -
  MPG64_RS02195 (MPG64_02195) - 455948..456286 (+) 339 WP_245076709.1 hypothetical protein -
  MPG64_RS02200 (MPG64_02200) - 456270..456830 (+) 561 WP_245076711.1 hypothetical protein -
  MPG64_RS02205 (MPG64_02205) - 456884..457177 (+) 294 WP_245077064.1 lysozyme -
  MPG64_RS02210 (MPG64_02210) - 457194..457367 (+) 174 WP_245076713.1 hypothetical protein -
  MPG64_RS07725 - 457386..457520 (+) 135 WP_342369677.1 lysozyme -
  MPG64_RS07695 - 457578..457775 (+) 198 WP_280635747.1 hypothetical protein -
  MPG64_RS02220 (MPG64_02220) - 457861..458242 (+) 382 Protein_435 DUF1294 domain-containing protein -
  MPG64_RS02225 (MPG64_02225) - 458242..459027 (+) 786 WP_245076715.1 hypothetical protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15165.55 Da        Isoelectric Point: 7.7474

>NTDB_id=666609 MPG64_RS02180 WP_245076703.1 454412..454816(+) (dprB) [Helicobacter pylori strain Hpfe095]
MILACDVGLKRIGIAMLLNGVILPLEAILRQNRNQASRDLSDLLREENIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDSSSIEAYENLGHLGKKNKRLATKDGRLDSLSACRILERYCQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666609 MPG64_RS02180 WP_245076703.1 454412..454816(+) (dprB) [Helicobacter pylori strain Hpfe095]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAGAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGCTCTAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATTTTGGAGCGCTATTGCCAGCAGGTTTTAAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

92.481

99.254

0.918