Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG55_RS06980 Genome accession   NZ_CP094083
Coordinates   1439867..1441180 (-) Length   437 a.a.
NCBI ID   WP_245028415.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe096     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1434867..1446180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG55_RS06950 (MPG55_06950) nadC 1435330..1436151 (-) 822 WP_245028409.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG55_RS06955 (MPG55_06955) nadA 1436151..1437161 (-) 1011 WP_245028411.1 quinolinate synthase NadA -
  MPG55_RS06960 (MPG55_06960) - 1437151..1437954 (-) 804 WP_180610117.1 phosphatidylserine decarboxylase -
  MPG55_RS06965 (MPG55_06965) - 1437951..1438454 (-) 504 WP_000953083.1 hypothetical protein -
  MPG55_RS06970 (MPG55_06970) - 1438467..1438961 (-) 495 WP_245028413.1 hypothetical protein -
  MPG55_RS06975 (MPG55_06975) mqnP 1438954..1439838 (-) 885 WP_000913963.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG55_RS06980 (MPG55_06980) comEC/comE3 1439867..1441180 (-) 1314 WP_245028415.1 ComEC/Rec2 family competence protein Machinery gene
  MPG55_RS06985 (MPG55_06985) - 1441177..1442643 (-) 1467 WP_245028417.1 replicative DNA helicase -
  MPG55_RS06990 (MPG55_06990) - 1442654..1444048 (-) 1395 WP_245028419.1 NAD(P)H-hydrate dehydratase -
  MPG55_RS06995 (MPG55_06995) crdS 1444051..1445238 (-) 1188 WP_245029434.1 copper-sensing histidine kinase CrdS -
  MPG55_RS07000 (MPG55_07000) crdR 1445219..1445860 (-) 642 WP_231201578.1 copper response regulator transcription factor CrdR -
  MPG55_RS07005 (MPG55_07005) - 1445946..1446170 (-) 225 Protein_1363 type II restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50295.36 Da        Isoelectric Point: 9.8918

>NTDB_id=666594 MPG55_RS06980 WP_245028415.1 1439867..1441180(-) (comEC/comE3) [Helicobacter pylori strain Hpfe096]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLVRKQDFKSHWRRFIDSVHSSTLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSTSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
VLVFLNMLIIAHTFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666594 MPG55_RS06980 WP_245028415.1 1439867..1441180(-) (comEC/comE3) [Helicobacter pylori strain Hpfe096]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGCTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTCTTAGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAGTGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGTTCATTCAAGCACTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCACGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATACCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTACATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTCTGAGTGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.05

100

0.941