Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   OG844_RS39430 Genome accession   NZ_CP108788
Coordinates   8630513..8631883 (+) Length   456 a.a.
NCBI ID   WP_406388640.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00887     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8625513..8636883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG844_RS39410 (OG844_39400) - 8626399..8627187 (-) 789 WP_406388645.1 peptidylprolyl isomerase -
  OG844_RS39415 (OG844_39405) - 8627337..8628023 (+) 687 WP_329212919.1 MBL fold metallo-hydrolase -
  OG844_RS39420 (OG844_39410) hisS 8628038..8629300 (+) 1263 WP_406388644.1 histidine--tRNA ligase -
  OG844_RS39425 (OG844_39420) - 8629833..8630468 (+) 636 WP_406388642.1 vitamin K epoxide reductase family protein -
  OG844_RS39430 (OG844_39425) rarA 8630513..8631883 (+) 1371 WP_406388640.1 replication-associated recombination protein A Machinery gene
  OG844_RS39435 (OG844_39430) - 8631919..8632620 (-) 702 WP_406388638.1 DUF2470 domain-containing protein -
  OG844_RS39440 (OG844_39435) rpsD 8632814..8633428 (+) 615 WP_073729460.1 30S ribosomal protein S4 -
  OG844_RS39445 (OG844_39440) - 8633445..8635643 (-) 2199 WP_406388636.1 ATP-binding protein -
  OG844_RS39450 (OG844_39445) - 8635872..8636321 (+) 450 WP_406396016.1 DUF948 domain-containing protein -
  OG844_RS39455 (OG844_39450) - 8636329..8636673 (+) 345 WP_406388634.1 DUF6167 family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48504.91 Da        Isoelectric Point: 6.4428

>NTDB_id=666590 OG844_RS39430 WP_406388640.1 8630513..8631883(+) (rarA) [Streptomyces sp. NBC_00887]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKQGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLEPLTDEDLRALLRRALSDERGLGGAVTLTDDAEAHLLRIAGGDARRALTALEAAAGAALAKHEPE
ITLTTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAISAAQEDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYVY
PHDVPGGIAAQEYAPEAVRGKRYYEPTRYGAEARYADVADRVRERLGRGEPGTASS

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=666590 OG844_RS39430 WP_406388640.1 8630513..8631883(+) (rarA) [Streptomyces sp. NBC_00887]
GTGGAGCCCGACCTCTTTACCGCAGCAGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCTCGTACGCTCGACGAGGTCGTGGGCCAGCAGCATCTGCTCAAGCAGGGCTCGCCCCTGCGCCGGCTCGTCGGCG
AAGGGAGCGGGGGACCGGCAGGCCCCTCCTCGGTGATCCTCTGGGGGCCGCCGGGCACCGGCAAGACGACCCTGGCGTAC
GTGGTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCAT
CGAGGGCGCGCGCCGCGCCACCGGGGGCTTCGGCAAGGAGACGGTCCTCTTCCTCGACGAGATCCACCGCTTCTCCAAGG
CGCAGCAGGACTCCCTGCTCCCCGCCGTGGAGAACCGCTGGGTGACCCTGATCGCCGCCACCACGGAGAATCCGTACTTC
TCGATCATCTCCCCGCTGCTGTCGCGCTCCCTGCTGCTGACCCTGGAGCCCCTCACCGACGAGGATCTGCGCGCCCTCCT
GCGCCGGGCCCTGTCCGATGAGCGGGGGCTGGGCGGAGCCGTCACCCTGACCGACGACGCGGAGGCGCATCTGCTGCGGA
TCGCGGGCGGTGACGCCCGGCGCGCCCTGACCGCTCTGGAGGCGGCGGCCGGAGCGGCCCTCGCCAAGCACGAGCCGGAG
ATCACGCTCACGACGCTCGAGGAGACCGTCGACCGGGCCGCCGTGAAGTACGACCGTGACGGCGACCAGCACTACGACGT
GGCGAGTGCCCTGATCAAGTCCATCCGCGGCTCCGACGTGGATGCCGCCCTGCACTACCTCGCCCGGATGATCGAGGCGG
GGGAGGACCCCCGGTTCATCGCCCGGAGGCTGATGATCTCCGCGAGTGAGGACATCGGGCTCGCCGATCCGACAGCGCTG
CCCACCGCGGTGGCAGCGGCCCAGGCGGTAGCCATGATCGGCTTTCCGGAGGCTGCGCTCACCCTCAGCCACGCCACGAT
CGCGCTGGCGCTCGCCCCGAAGTCCAACGCGGCCACCCTGGCGATCTCGGCGGCGCAGGAGGATGTGCGCAGAGGCCTCG
CAGGCCCGGTTCCCGCCCATCTGCGCGACGGTCACTACAAGGGTGCCGCCAAGCTGGGCCACGCCCAGGGCTATGTCTAC
CCCCACGACGTCCCCGGCGGGATCGCCGCACAGGAGTACGCCCCGGAGGCGGTCCGCGGCAAGCGCTACTACGAACCCAC
GCGCTACGGCGCGGAGGCGCGGTACGCGGACGTGGCGGACCGGGTCCGTGAGCGGCTCGGCCGCGGCGAACCGGGCACCG
CGTCGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

45.455

94.079

0.428