Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG55_RS05480 Genome accession   NZ_CP094083
Coordinates   1132165..1132569 (-) Length   134 a.a.
NCBI ID   WP_245028045.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1127165..1137569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG55_RS05445 (MPG55_05445) - 1128276..1129061 (-) 786 Protein_1055 hypothetical protein -
  MPG55_RS05450 (MPG55_05450) - 1129061..1129446 (-) 386 Protein_1056 DUF1294 domain-containing protein -
  MPG55_RS05455 (MPG55_05455) - 1129776..1129937 (-) 162 WP_245028037.1 lysozyme -
  MPG55_RS05460 (MPG55_05460) - 1129957..1130457 (-) 501 WP_245028039.1 glycoside hydrolase family protein -
  MPG55_RS05465 (MPG55_05465) - 1130468..1131028 (-) 561 WP_245028041.1 hypothetical protein -
  MPG55_RS05470 (MPG55_05470) - 1131012..1131350 (-) 339 WP_000699911.1 hypothetical protein -
  MPG55_RS05475 (MPG55_05475) - 1131482..1132036 (-) 555 WP_245028043.1 tetratricopeptide repeat protein -
  MPG55_RS05480 (MPG55_05480) dprB 1132165..1132569 (-) 405 WP_245028045.1 Holliday junction resolvase RuvX Machinery gene
  MPG55_RS05485 (MPG55_05485) dprA 1132566..1133366 (-) 801 WP_245028047.1 DNA-processing protein DprA Machinery gene
  MPG55_RS05490 (MPG55_05490) minE 1133378..1133611 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG55_RS05495 (MPG55_05495) minD 1133608..1134414 (-) 807 WP_001019098.1 septum site-determining protein MinD -
  MPG55_RS05500 (MPG55_05500) ilvC 1134438..1135430 (-) 993 WP_245029418.1 ketol-acid reductoisomerase -
  MPG55_RS05510 (MPG55_05510) - 1135679..1136461 (+) 783 WP_245028049.1 NAD+ synthase -
  MPG55_RS05515 (MPG55_05515) - 1136458..1137396 (+) 939 WP_245028051.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15348.99 Da        Isoelectric Point: 9.1129

>NTDB_id=666590 MPG55_RS05480 WP_245028045.1 1132165..1132569(-) (dprB) [Helicobacter pylori strain Hpfe096]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASKDLSDLLREKNIQVLVVGKPNESYADMNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILEHYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666590 MPG55_RS05480 WP_245028045.1 1132165..1132569(-) (dprB) [Helicobacter pylori strain Hpfe096]
GTGATTTTGGCATGCGATGTGGGGTTAAAGCGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAAGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACATGAACGCGCGTATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCACTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.939

98.507

0.925