Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG55_RS00010 Genome accession   NZ_CP094083
Coordinates   1590..3023 (+) Length   477 a.a.
NCBI ID   WP_245028567.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe096     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG55_RS00005 (MPG55_00005) dnaA 1..1368 (+) 1368 WP_245028565.1 chromosomal replication initiator protein DnaA -
  MPG55_RS00010 (MPG55_00010) comH 1590..3023 (+) 1434 WP_245028567.1 competence protein Machinery gene
  MPG55_RS00020 (MPG55_00020) - 3203..3955 (+) 753 WP_245028569.1 exodeoxyribonuclease III -
  MPG55_RS00025 (MPG55_00025) - 3952..4587 (-) 636 WP_245028571.1 outer membrane protein -
  MPG55_RS00030 (MPG55_00030) - 4591..4935 (-) 345 WP_245028573.1 hypothetical protein -
  MPG55_RS00035 (MPG55_00035) recG 5017..6882 (+) 1866 WP_245028575.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 54644.44 Da        Isoelectric Point: 6.9524

>NTDB_id=666578 MPG55_RS00010 WP_245028567.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe096]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKEPHQMPSLNAPIQKPQNKPTSSQQSPQNFSYSESKLGSKNPKNSLLQPLTT
PSKISSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNADTNEHNENNENRDNVEKQTIRDPNVKEFACG
KWVYDDENLQAYRPSILKRVDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQARSS
TEKCKRARARKDGTTRQCYLIEEPLKQAWESEYEITTQLVKAVYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNELNL
NDKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=666578 MPG55_RS00010 WP_245028567.1 1590..3023(+) (comH) [Helicobacter pylori strain Hpfe096]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACACTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCGCACCAAATGCCTTCCTTAAACGCGCCCATACAAAAACCACAAAACAAACCCACTTCATCGCAACAAT
CTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTAACCACT
CCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTCAGAAGA
TCAAGAAAACAACCTCTTTATAGCGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTAATGAAC
ACAATGAAAACAATGAGAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCGTGCGGG
AAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCGTTGATGAAGACAAACAGACTGC
AACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAATCTCTG
TTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGAAGCTCT
ACAGAAAAATGCAAAAGAGCTAGAGCACGAAAAGACGGCACGACTAGGCAATGCTATCTGATAGAAGAGCCTTTAAAACA
AGCGTGGGAGAGCGAGTATGAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATCAAACAG
AGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTGAATTTG
AATGATAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGAATACAA
AGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAGCCAAAA
GCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.441

100

0.918