Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG63_RS07185 Genome accession   NZ_CP094082
Coordinates   1507115..1508428 (-) Length   437 a.a.
NCBI ID   WP_245047116.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe097     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502115..1513428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG63_RS07155 (MPG63_07155) nadC 1502578..1503399 (-) 822 WP_245047110.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG63_RS07160 (MPG63_07160) nadA 1503399..1504409 (-) 1011 WP_245047112.1 quinolinate synthase NadA -
  MPG63_RS07165 (MPG63_07165) - 1504396..1505202 (-) 807 WP_245047114.1 phosphatidylserine decarboxylase -
  MPG63_RS07170 (MPG63_07170) - 1505196..1505702 (-) 507 WP_000953105.1 hypothetical protein -
  MPG63_RS07175 (MPG63_07175) - 1505715..1506209 (-) 495 WP_220973094.1 hypothetical protein -
  MPG63_RS07180 (MPG63_07180) mqnP 1506202..1507086 (-) 885 WP_156605365.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG63_RS07185 (MPG63_07185) comEC/comE3 1507115..1508428 (-) 1314 WP_245047116.1 ComEC/Rec2 family competence protein Machinery gene
  MPG63_RS07190 (MPG63_07190) - 1508425..1509885 (-) 1461 WP_245047118.1 replicative DNA helicase -
  MPG63_RS07195 (MPG63_07195) - 1509896..1511290 (-) 1395 WP_245047120.1 NAD(P)H-hydrate dehydratase -
  MPG63_RS07200 (MPG63_07200) crdS 1511293..1512495 (-) 1203 WP_245048185.1 copper-sensing histidine kinase CrdS -
  MPG63_RS07205 (MPG63_07205) crdR 1512461..1513102 (-) 642 WP_245047122.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50213.20 Da        Isoelectric Point: 9.8368

>NTDB_id=666573 MPG63_RS07185 WP_245047116.1 1507115..1508428(-) (comEC/comE3) [Helicobacter pylori strain Hpfe097]
MKDKTFHGAFELLATPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRYAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARFFQAISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLMIPTIFVSSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666573 MPG63_RS07185 WP_245047116.1 1507115..1508428(-) (comEC/comE3) [Helicobacter pylori strain Hpfe097]
TTGAAAGATAAAACTTTTCATGGTGCGTTTGAACTTCTTGCAACTCCCAAAGAATATTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTTAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAGATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGTGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATTTTTTCAAGCTATAAGCTTAAGT
GCGCTAATTTTTTTGAACATGCTCATTATCGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTAGATGGTA
TTTTAAACATGCCTTTAATGATCCCTACGATTTTTGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943