Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG844_RS31810 Genome accession   NZ_CP108788
Coordinates   6964147..6965139 (+) Length   330 a.a.
NCBI ID   WP_406394925.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00887     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6959147..6970139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG844_RS31790 (OG844_31755) - 6959176..6959907 (-) 732 WP_406394916.1 alpha/beta fold hydrolase -
  OG844_RS31795 (OG844_31760) - 6959943..6960431 (-) 489 WP_406394918.1 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein -
  OG844_RS31800 (OG844_31765) - 6960541..6961911 (-) 1371 WP_406394920.1 DUF1996 domain-containing protein -
  OG844_RS31805 (OG844_31770) - 6962090..6963805 (-) 1716 WP_406394923.1 discoidin domain-containing protein -
  OG844_RS31810 (OG844_31775) cytR 6964147..6965139 (+) 993 WP_406394925.1 LacI family DNA-binding transcriptional regulator Regulator
  OG844_RS31815 (OG844_31780) - 6965502..6966692 (+) 1191 WP_406394927.1 serine/threonine-protein kinase -
  OG844_RS31820 (OG844_31785) - 6966709..6967695 (-) 987 WP_406394929.1 MarR family transcriptional regulator -
  OG844_RS31825 (OG844_31790) - 6968060..6969085 (-) 1026 WP_406394931.1 NlpC/P60 family protein -
  OG844_RS31830 (OG844_31795) - 6969400..6969789 (-) 390 WP_406394932.1 hypothetical protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35175.18 Da        Isoelectric Point: 6.9980

>NTDB_id=666573 OG844_RS31810 WP_406394925.1 6964147..6965139(+) (cytR) [Streptomyces sp. NBC_00887]
MKRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVAELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELETSGKRLVLMLAESDRSRTRVVQYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAQEVP
YVALDNAGGAALAVRHLLERGRRRIATITGPLELYEARERLDGYRRTLRDTGRRSIVALGDFTRASGAEAMRQLLEDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVIGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLGLIDGGPTGPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=666573 OG844_RS31810 WP_406394925.1 6964147..6965139(+) (cytR) [Streptomyces sp. NBC_00887]
ATGAAACGCCCCACTCTCGAAGTGGTCGCCGCCCGAGCGGGCGTGTCCAAATCGAGCGTCTCCCGTGTCATCAACGGCGA
GACGACGGTCGCCCCGCAGATCCGAGACGTCGTCATGCGCGCCGTAGCCGAATTGGGCTACGTGCCCAACGGCGCCGCAC
GTAATCTCGTCACCCGCCGCACGGACACGCTCGCCGTCGTGGTCTCCGACCCGCCTCAAGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGAGAGCTCGAGACGTCGGGTAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCGGAGCCGGACCAGAGTGGTGCAGTACATCGCCGGCGGGCATGTGGACGGCGTGCTCCTGGTCGCCCTGCACGGTA
CGGATCCGTTGCCGGCCGCACTGGCCCGGCAGGGCCTGCCTGTCGTGTCCTTCAACCGCACCTCCGCGCAGGAGGTCCCG
TACGTGGCGCTGGACAACGCCGGCGGAGCGGCGCTGGCCGTGCGTCATCTCCTGGAGCGCGGGCGTCGCCGGATCGCCAC
CATCACCGGGCCGCTCGAACTGTACGAGGCGCGTGAGCGCCTCGATGGCTACCGTCGGACGCTGCGTGACACCGGCCGTC
GCTCCATCGTGGCACTGGGCGACTTCACCAGAGCCTCCGGCGCCGAAGCCATGCGGCAGCTCCTGGAGGACGATCCGGAC
CTCGATGCGGTGTTCGCAGCCAACGACCTGATGGCGATCGGAGCCCTGCGCACCCTCCATCAAGCGGGCCGACGCGTCCC
CGAAGACGTGGCGGTCATCGGCTTCGACGACATAGAAGCCGCCTCCTACACCAGTCCCGCGCTCACCTCGGTGCGCAGCC
CGATGGCCGACCAGGCGACCGCCGCCGTCCACCTGCTCCTCGGCCTGATCGACGGCGGCCCCACAGGGCCGGTGATCATG
CCGAACGAACTCGTGGTGCGCGAATCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361