Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG63_RS05735 Genome accession   NZ_CP094082
Coordinates   1206867..1207271 (-) Length   134 a.a.
NCBI ID   WP_245046845.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe097     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1201867..1212271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG63_RS05700 (MPG63_05700) - 1202683..1203468 (-) 786 WP_245046839.1 hypothetical protein -
  MPG63_RS05705 (MPG63_05705) - 1203468..1203854 (-) 387 WP_245048170.1 DUF1294 domain-containing protein -
  MPG63_RS05710 (MPG63_05710) - 1203958..1204170 (-) 213 WP_280635459.1 hypothetical protein -
  MPG63_RS07930 - 1204182..1204449 (-) 268 Protein_1115 lysozyme -
  MPG63_RS05715 (MPG63_05715) - 1204526..1204771 (-) 246 WP_245046841.1 lysozyme -
  MPG63_RS05720 (MPG63_05720) - 1204877..1205437 (-) 561 WP_220822583.1 hypothetical protein -
  MPG63_RS05725 (MPG63_05725) - 1205421..1205759 (-) 339 WP_000699916.1 hypothetical protein -
  MPG63_RS05730 (MPG63_05730) - 1205942..1206736 (-) 795 WP_245046843.1 tetratricopeptide repeat protein -
  MPG63_RS05735 (MPG63_05735) dprB 1206867..1207271 (-) 405 WP_245046845.1 Holliday junction resolvase RuvX Machinery gene
  MPG63_RS05740 (MPG63_05740) dprA 1207268..1208068 (-) 801 WP_245046847.1 DNA-processing protein DprA Machinery gene
  MPG63_RS05745 (MPG63_05745) minE 1208080..1208313 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG63_RS05750 (MPG63_05750) minD 1208310..1209116 (-) 807 WP_245046849.1 septum site-determining protein MinD -
  MPG63_RS05755 (MPG63_05755) ilvC 1209141..1210133 (-) 993 WP_245046851.1 ketol-acid reductoisomerase -
  MPG63_RS05765 (MPG63_05765) - 1210382..1211164 (+) 783 WP_245046853.1 NAD+ synthase -
  MPG63_RS05770 (MPG63_05770) - 1211161..1212099 (+) 939 WP_245046855.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15247.70 Da        Isoelectric Point: 8.5110

>NTDB_id=666569 MPG63_RS05735 WP_245046845.1 1206867..1207271(-) (dprB) [Helicobacter pylori strain Hpfe097]
MILACDVGLKRIGIATLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHESYADTNARIEHFIKLLDFKGE
IVFTNEDRSSIEACENLEHLGKKDKRLAIKDGRLDSLSACRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666569 MPG63_RS05735 WP_245046845.1 1206867..1207271(-) (dprB) [Helicobacter pylori strain Hpfe097]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCCATGAAAGCTATGCGGATACGAACGCGCGCATTGAACATTTCATCAAGCTTTTGGACTTTAAGGGCGAA
ATCGTTTTTACCAATGAAGACAGATCCAGCATAGAAGCCTGTGAAAATTTGGAGCATTTGGGTAAGAAAGACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.489

99.254

0.948