Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG38_RS07285 Genome accession   NZ_CP094080
Coordinates   1517767..1519080 (-) Length   437 a.a.
NCBI ID   WP_245101137.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe099     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1512767..1524080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG38_RS07255 (MPG38_07255) nadC 1513230..1514051 (-) 822 WP_245101133.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG38_RS07260 (MPG38_07260) nadA 1514051..1515061 (-) 1011 WP_245101136.1 quinolinate synthase NadA -
  MPG38_RS07265 (MPG38_07265) - 1515051..1515854 (-) 804 WP_000561100.1 phosphatidylserine decarboxylase -
  MPG38_RS07270 (MPG38_07270) - 1515851..1516354 (-) 504 WP_000953083.1 hypothetical protein -
  MPG38_RS07275 (MPG38_07275) - 1516367..1516861 (-) 495 WP_014537179.1 hypothetical protein -
  MPG38_RS07280 (MPG38_07280) mqnP 1516854..1517738 (-) 885 WP_001919002.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG38_RS07285 (MPG38_07285) comEC/comE3 1517767..1519080 (-) 1314 WP_245101137.1 ComEC/Rec2 family competence protein Machinery gene
  MPG38_RS07290 (MPG38_07290) - 1519077..1520543 (-) 1467 WP_245101138.1 replicative DNA helicase -
  MPG38_RS07295 (MPG38_07295) - 1520554..1521948 (-) 1395 WP_245101140.1 NAD(P)H-hydrate dehydratase -
  MPG38_RS07300 (MPG38_07300) crdS 1521951..1523153 (-) 1203 WP_245101666.1 copper-sensing histidine kinase CrdS -
  MPG38_RS07305 (MPG38_07305) crdR 1523119..1523760 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -
  MPG38_RS07310 (MPG38_07310) - 1523848..1524072 (-) 225 Protein_1423 restriction endonuclease -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50198.27 Da        Isoelectric Point: 9.9068

>NTDB_id=666550 MPG38_RS07285 WP_245101137.1 1517767..1519080(-) (comEC/comE3) [Helicobacter pylori strain Hpfe099]
MKDKTFQGAFELLTTPKEYLLCGVFLSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRRAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHVRHFIDSVHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
MLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFVVFFPLSLFLHAVGLGSLLDGILNMPLTIPTIFVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666550 MPG38_RS07285 WP_245101137.1 1517767..1519080(-) (comEC/comE3) [Helicobacter pylori strain Hpfe099]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTGTTTTTAAG
CCTTTTGTTAGCGCTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCGTGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATG
TGCGCCATTTCATTGATAGCGTTCATTCAAGTGCTTTAGTGGGCAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAATGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCTTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
ATGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTGTCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGTTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.737

100

0.947