Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG38_RS05720 Genome accession   NZ_CP094080
Coordinates   1199815..1200219 (-) Length   134 a.a.
NCBI ID   WP_245100749.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe099     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1194815..1205219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG38_RS05680 (MPG38_05680) - 1195100..1196185 (-) 1086 WP_245100738.1 hypothetical protein -
  MPG38_RS05685 (MPG38_05685) - 1196175..1196960 (-) 786 WP_245100739.1 hypothetical protein -
  MPG38_RS05690 (MPG38_05690) - 1196960..1197341 (-) 382 Protein_1107 DUF1294 domain-containing protein -
  MPG38_RS05695 (MPG38_05695) - 1197672..1197833 (-) 162 WP_014536434.1 lysozyme -
  MPG38_RS05700 (MPG38_05700) - 1197853..1198347 (-) 495 WP_245100741.1 lysozyme -
  MPG38_RS05705 (MPG38_05705) - 1198358..1198918 (-) 561 WP_245100744.1 hypothetical protein -
  MPG38_RS05710 (MPG38_05710) - 1198902..1199240 (-) 339 WP_015087093.1 hypothetical protein -
  MPG38_RS05715 (MPG38_05715) - 1199428..1199757 (-) 330 WP_245100746.1 tetratricopeptide repeat protein -
  MPG38_RS05720 (MPG38_05720) dprB 1199815..1200219 (-) 405 WP_245100749.1 Holliday junction resolvase RuvX Machinery gene
  MPG38_RS05725 (MPG38_05725) dprA 1200216..1201016 (-) 801 WP_219028918.1 DNA-processing protein DprA Machinery gene
  MPG38_RS05730 (MPG38_05730) minE 1201028..1201261 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG38_RS05735 (MPG38_05735) minD 1201258..1202064 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG38_RS05740 (MPG38_05740) ilvC 1202089..1203081 (-) 993 WP_245100751.1 ketol-acid reductoisomerase -
  MPG38_RS05750 (MPG38_05750) - 1203339..1204121 (+) 783 WP_245100752.1 NAD+ synthase -
  MPG38_RS05755 (MPG38_05755) - 1204118..1205056 (+) 939 WP_245100755.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15236.84 Da        Isoelectric Point: 9.8304

>NTDB_id=666546 MPG38_RS05720 WP_245100749.1 1199815..1200219(-) (dprB) [Helicobacter pylori strain Hpfe099]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPHESYADTNVRIESFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666546 MPG38_RS05720 WP_245100749.1 1199815..1200219(-) (dprB) [Helicobacter pylori strain Hpfe099]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTGAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCCATGAAAGCTATGCGGACACGAACGTGCGCATTGAATCTTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94