Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   OG844_RS18660 Genome accession   NZ_CP108788
Coordinates   4112130..4113257 (-) Length   375 a.a.
NCBI ID   WP_406391677.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00887     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4107130..4118257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG844_RS18630 (OG844_18630) - 4107640..4109274 (+) 1635 WP_406391669.1 FAD-dependent monooxygenase -
  OG844_RS18635 - 4109307..4109393 (+) 87 WP_311605579.1 putative leader peptide -
  OG844_RS18640 (OG844_18635) - 4109469..4110020 (+) 552 WP_406391671.1 cysteine dioxygenase -
  OG844_RS18645 (OG844_18640) - 4110017..4110424 (+) 408 WP_406391673.1 rhodanese-like domain-containing protein -
  OG844_RS18650 (OG844_18645) - 4110646..4111281 (+) 636 WP_406391674.1 hypothetical protein -
  OG844_RS18655 (OG844_18650) recX 4111434..4112126 (-) 693 WP_406391676.1 recombination regulator RecX -
  OG844_RS18660 (OG844_18655) recA 4112130..4113257 (-) 1128 WP_406391677.1 recombinase RecA Machinery gene
  OG844_RS18665 (OG844_18660) - 4113526..4114443 (+) 918 WP_406391679.1 SDR family oxidoreductase -
  OG844_RS18670 (OG844_18665) - 4114494..4115615 (-) 1122 WP_406396180.1 AI-2E family transporter -
  OG844_RS18675 (OG844_18670) - 4115778..4115972 (-) 195 WP_356427076.1 DUF3046 domain-containing protein -
  OG844_RS18680 (OG844_18675) - 4116052..4116966 (+) 915 WP_406391681.1 hypothetical protein -
  OG844_RS18685 (OG844_18680) - 4116982..4117287 (-) 306 WP_351167777.1 AzlD domain-containing protein -
  OG844_RS18690 (OG844_18685) - 4117284..4118060 (-) 777 WP_406391683.1 AzlC family ABC transporter permease -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 39695.28 Da        Isoelectric Point: 6.8979

>NTDB_id=666534 OG844_RS18660 WP_406391677.1 4112130..4113257(-) (recA) [Streptomyces sp. NBC_00887]
MAGNDREKALDAALAQIERQFGKGAVMRLGERPNEPIEVIPTGSTALDVALGVGGLPRGRVVEVYGPESSGKTTLTLHAV
ANAQKLGGTVAFIDAEHALDPEYAKKLGVDIDNLILSQPDNGEQALEIVDMLIRSGALDLIVIDSVAALVPRAEIEGEMG
DSHVGLQARLMSQALRKITSALNQSKTTAIFINQLREKIGVMFGSPETTTGGRALKFYASVRLDIRRIETLKDGTDAVGN
RTRVKVVKNKVAPPFKQAEFDILYGQGISREGGLIDMGVDHGFVRKAGAWYTYEGDQLGQGKENARNFLKDNPDLANEIE
KKILEKLGIGVRPKDPATEPAADATATAGAADGAAKSVPAPATKAKPAKAAAAKS

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=666534 OG844_RS18660 WP_406391677.1 4112130..4113257(-) (recA) [Streptomyces sp. NBC_00887]
ATGGCAGGTAACGACCGCGAGAAGGCGCTGGACGCCGCACTCGCACAAATTGAGCGCCAATTCGGCAAGGGCGCGGTGAT
GCGCCTCGGTGAGCGGCCGAACGAGCCCATCGAGGTGATCCCCACCGGGTCGACGGCACTCGACGTCGCGCTCGGCGTCG
GCGGCCTGCCGCGCGGCCGTGTGGTGGAGGTGTACGGACCGGAGTCCTCCGGCAAGACGACGCTGACGCTGCACGCCGTG
GCGAATGCGCAGAAGCTCGGCGGCACGGTGGCCTTCATCGACGCCGAGCACGCCCTCGACCCCGAGTACGCGAAGAAGCT
CGGCGTCGACATCGACAACCTCATCCTGTCCCAGCCGGACAACGGTGAGCAGGCTCTCGAGATCGTCGACATGCTGATCC
GCTCGGGCGCCCTCGACCTGATCGTCATCGACTCCGTCGCGGCCCTGGTGCCCCGTGCGGAGATCGAGGGCGAGATGGGT
GACTCGCACGTGGGTCTGCAGGCTCGTCTGATGAGCCAGGCGCTCCGGAAGATCACCAGTGCGCTCAACCAGTCCAAGAC
CACCGCGATCTTCATCAACCAGCTCCGCGAGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACCACCACGGGTGGCCGCG
CGCTCAAGTTCTACGCCTCGGTGCGCCTCGACATCCGACGGATCGAGACGCTCAAGGACGGCACCGACGCCGTCGGCAAC
CGCACGCGCGTCAAGGTCGTCAAGAACAAGGTCGCGCCGCCCTTCAAGCAGGCCGAGTTCGACATCCTCTACGGCCAGGG
CATCAGCCGCGAGGGCGGTCTGATCGACATGGGCGTGGACCACGGCTTCGTCCGCAAGGCCGGCGCCTGGTACACGTACG
AGGGCGACCAGCTCGGCCAGGGCAAGGAGAACGCCCGCAACTTCCTCAAGGACAACCCCGATCTCGCCAACGAGATCGAG
AAGAAGATCCTGGAGAAGCTCGGCATCGGTGTGCGGCCGAAGGACCCGGCGACGGAGCCCGCTGCCGACGCGACCGCCAC
CGCGGGTGCCGCCGACGGAGCGGCGAAGTCGGTGCCCGCTCCTGCGACCAAGGCCAAGCCCGCCAAGGCTGCGGCGGCCA
AGAGCTAG

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA_N)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Staphylococcus aureus strain ATCC 12600

66.871

86.933

0.581
  recA Pseudomonas stutzeri DSM 10701

67.492

86.133

0.581
  recA Acinetobacter baumannii D1279779

67.492

86.133

0.581
  recA Acinetobacter nosocomialis M2

67.183

86.133

0.579
  recA Ralstonia pseudosolanacearum GMI1000

69.329

83.467

0.579
  recA Neisseria gonorrhoeae strain FA1090

67.601

85.6

0.579
  recA Neisseria gonorrhoeae MS11

67.601

85.6

0.579
  recA Acinetobacter baylyi ADP1

66.975

86.4

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

66.564

86.933

0.579
  recA Vibrio cholerae strain A1552

66.873

86.133

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.873

86.133

0.576
  recA Latilactobacillus sakei subsp. sakei 23K

63.343

90.933

0.576
  recA Streptococcus thermophilus LMG 18311

61.584

90.933

0.56
  recA Streptococcus mutans UA159

63.444

88.267

0.56
  recA Streptococcus pyogenes NZ131

63.636

88

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.333

88

0.557
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

87.2

0.555
  recA Streptococcus thermophilus LMD-9

62.84

88.267

0.555
  recA Streptococcus mitis NCTC 12261

62.538

88.267

0.552
  recA Streptococcus mitis SK321

62.538

88.267

0.552
  recA Streptococcus pneumoniae R6

62.236

88.267

0.549
  recA Streptococcus pneumoniae TIGR4

62.236

88.267

0.549
  recA Streptococcus pneumoniae Rx1

62.236

88.267

0.549
  recA Streptococcus pneumoniae D39

62.236

88.267

0.549
  recA Streptococcus pneumoniae R36A

62.236

88.267

0.549
  recA Helicobacter pylori 26695

63.077

86.667

0.547
  recA Helicobacter pylori strain NCTC11637

63.077

86.667

0.547
  recA Glaesserella parasuis strain SC1401

63.354

85.867

0.544
  recA Lactococcus lactis subsp. cremoris KW2

62.769

86.667

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.006

85.867

0.507