Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG38_RS00010 Genome accession   NZ_CP094080
Coordinates   1590..3029 (+) Length   479 a.a.
NCBI ID   WP_245101229.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe099     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG38_RS00005 (MPG38_00005) dnaA 1..1368 (+) 1368 WP_075658165.1 chromosomal replication initiator protein DnaA -
  MPG38_RS00010 (MPG38_00010) comH 1590..3029 (+) 1440 WP_245101229.1 competence protein Machinery gene
  MPG38_RS00020 (MPG38_00020) - 3207..3959 (+) 753 WP_000767562.1 exodeoxyribonuclease III -
  MPG38_RS00025 (MPG38_00025) - 3956..4591 (-) 636 WP_245101230.1 outer membrane protein -
  MPG38_RS00030 (MPG38_00030) - 4595..4948 (-) 354 WP_220913568.1 hypothetical protein -
  MPG38_RS00035 (MPG38_00035) recG 5030..6895 (+) 1866 WP_245101231.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54955.03 Da        Isoelectric Point: 7.4581

>NTDB_id=666534 MPG38_RS00010 WP_245101229.1 1590..3029(+) (comH) [Helicobacter pylori strain Hpfe099]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNVPIQKPQNKPTSSQQSLQNFPYTESKLGSKNPKNSLLQPL
ATPNKISSANEVKAPTNDTKPPLKHSSEDQENNLFITPPTEKTLPNNTPNANINEHNESHENRDSVEKQAIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTIRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQTEPTFYETNELAYSSTRKSEVKQNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSMPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666534 MPG38_RS00010 WP_245101229.1 1590..3029(+) (comH) [Helicobacter pylori strain Hpfe099]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCCACACCAAATGCCTTCTTTAAACGTGCCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTCCTTACACAGAGTCCAAACTAGGCTCTAAAAATCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAGCTCCGCTAATGAAGTTAAAGCGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTATAACACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTAATATTA
ATGAACACAATGAAAGCCATGAGAATAGGGATAGTGTGGAAAAACAAGCGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGACGAAAATTTACAAGCCTACCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATTCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGATTAGACAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAGAGTGAAGTTAAGCAAAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CTAAAAGCATGCCCTTGAGTATTGAAAATTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

90.814

100

0.908