Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG05_RS07010 Genome accession   NZ_CP094079
Coordinates   1463973..1464254 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe100     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1458973..1469254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG05_RS06990 (MPG05_06990) - 1459702..1461042 (-) 1341 WP_245070442.1 hypothetical protein -
  MPG05_RS07000 (MPG05_07000) comB4 1461344..1463707 (-) 2364 WP_245070443.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG05_RS07005 (MPG05_07005) comB3 1463710..1463973 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  MPG05_RS07010 (MPG05_07010) comB2 1463973..1464254 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG05_RS07015 (MPG05_07015) - 1464399..1465226 (-) 828 WP_180470205.1 DUF5718 family protein -
  MPG05_RS07020 (MPG05_07020) - 1465317..1466369 (-) 1053 WP_245070444.1 MnmA/TRMU family protein -
  MPG05_RS07025 (MPG05_07025) dnaG 1466366..1468045 (-) 1680 WP_245070445.1 DNA primase -
  MPG05_RS07030 (MPG05_07030) groES 1468321..1468677 (+) 357 WP_128028695.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666533 MPG05_RS07010 WP_001272686.1 1463973..1464254(-) (comB2) [Helicobacter pylori strain Hpfe100]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666533 MPG05_RS07010 WP_001272686.1 1463973..1464254(-) (comB2) [Helicobacter pylori strain Hpfe100]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCCAAGGGGATTTTAATGGTAATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989