Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG844_RS18510 Genome accession   NZ_CP108788
Coordinates   4077625..4078422 (+) Length   265 a.a.
NCBI ID   WP_406391640.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00887     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4072625..4083422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG844_RS18500 (OG844_18500) - 4073502..4076411 (-) 2910 WP_406391639.1 vitamin B12-dependent ribonucleotide reductase -
  OG844_RS18505 (OG844_18505) nrdR 4076568..4077083 (-) 516 WP_351167840.1 transcriptional regulator NrdR -
  OG844_RS18510 (OG844_18510) dinR/lexA 4077625..4078422 (+) 798 WP_406391640.1 transcriptional repressor LexA Regulator
  OG844_RS18515 (OG844_18515) - 4078492..4080459 (-) 1968 WP_406391642.1 ATP-dependent DNA helicase -
  OG844_RS18520 (OG844_18520) - 4080522..4082378 (-) 1857 WP_406391643.1 IucA/IucC family protein -
  OG844_RS18525 (OG844_18525) - 4082439..4083167 (-) 729 WP_406391645.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28757.42 Da        Isoelectric Point: 7.0792

>NTDB_id=666532 OG844_RS18510 WP_406391640.1 4077625..4078422(+) (dinR/lexA) [Streptomyces sp. NBC_00887]
MTTTADSATITAQDHRSQSRLEPVHAMNDSGTNTEGSEPTRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=666532 OG844_RS18510 WP_406391640.1 4077625..4078422(+) (dinR/lexA) [Streptomyces sp. NBC_00887]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCGAT
GAATGACTCAGGCACAAACACGGAGGGGTCGGAGCCCACGCGCCCAGCGCGCTCGTTGCCCGGCCGACCTCCAGGAATCC
GGGCGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTCATCCGTGACTCCGTACAGCGCCGAGGGTAT
CCCCCGTCGATGCGGGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACGTCGTCCGTCGCTCATCAGCTGATGGCCCTGGA
GCGCAAGGGCTTCCTGCGCCGAGATCCTCATCGCCCCCGGGCGTACGAGGTCCGGGGTTCGGACCAGCCCAGCACCCAGA
CGACGGACACCACGGGGAAGCCCGCGGCTTCGTACGTCCCGCTGGTCGGCCGGATCGCGGCCGGCGGGCCGATCCTCGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGG
TGACTCGATGATCGAGGCGGCGATCATGGACGGTGACTGGGTCACCGTCCGGCGGCAGCCCGTCGCGGAGAACGGGGACA
TCGTGGCGGCCATGCTGGACGGCGAGGCGACGGTCAAGCGTTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCAC
AACTCCGCGTACCAGCCGATTCCGGGTGACGAGGCGACCATTCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37