Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG05_RS06875 Genome accession   NZ_CP094079
Coordinates   1431046..1432359 (-) Length   437 a.a.
NCBI ID   WP_245070431.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe100     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1426046..1437359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG05_RS06845 (MPG05_06845) nadC 1426509..1427330 (-) 822 WP_245070429.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG05_RS06850 (MPG05_06850) nadA 1427330..1428340 (-) 1011 WP_245070430.1 quinolinate synthase NadA -
  MPG05_RS06855 (MPG05_06855) - 1428330..1429133 (-) 804 WP_129066340.1 phosphatidylserine decarboxylase -
  MPG05_RS06860 (MPG05_06860) - 1429130..1429633 (-) 504 WP_154408318.1 helix-turn-helix domain-containing protein -
  MPG05_RS06865 (MPG05_06865) - 1429646..1430140 (-) 495 WP_000544981.1 hypothetical protein -
  MPG05_RS06870 (MPG05_06870) mqnP 1430133..1430975 (-) 843 WP_231261077.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG05_RS06875 (MPG05_06875) comEC/comE3 1431046..1432359 (-) 1314 WP_245070431.1 ComEC/Rec2 family competence protein Machinery gene
  MPG05_RS06880 (MPG05_06880) - 1432356..1433816 (-) 1461 WP_245070432.1 replicative DNA helicase -
  MPG05_RS06885 (MPG05_06885) - 1433827..1435221 (-) 1395 WP_245070433.1 NAD(P)H-hydrate dehydratase -
  MPG05_RS06890 (MPG05_06890) crdS 1435224..1436411 (-) 1188 WP_245071269.1 copper-sensing histidine kinase CrdS -
  MPG05_RS06895 (MPG05_06895) crdR 1436392..1437033 (-) 642 WP_180585333.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50198.33 Da        Isoelectric Point: 9.8315

>NTDB_id=666529 MPG05_RS06875 WP_245070431.1 1431046..1432359(-) (comEC/comE3) [Helicobacter pylori strain Hpfe100]
MKDKTFQGAFELLATPKEYLLCGVILSLLLVLNLYLEYLNYQKLDFSKPISLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRYAQFFGKIKPCSFLESLKSCFFQTYSFSLVRKQDFKSHWRHFIDSAHSSVLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQTFFKTSSFLVRSFQVISLS
VLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVSSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666529 MPG05_RS06875 WP_245070431.1 1431046..1432359(-) (comEC/comE3) [Helicobacter pylori strain Hpfe100]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
TCTTTTGTTAGTGCTCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTATAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCTACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAGTGCGAAAACAAGATTTCAAATCGCATT
GGCGCCATTTCATTGATAGCGCTCATTCAAGCGTTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAATGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAACCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGC
GTGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTTTTGCATGCTGTGGGTTTGGGGTCTTTGCTAGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTGAGTGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.279

100

0.943