Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG844_RS14490 Genome accession   NZ_CP108788
Coordinates   3177572..3178627 (+) Length   351 a.a.
NCBI ID   WP_406390480.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00887     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3172572..3183627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG844_RS14475 (OG844_14480) - 3173281..3174204 (+) 924 WP_406390476.1 FAD-dependent oxidoreductase -
  OG844_RS14480 (OG844_14485) - 3174218..3175954 (-) 1737 WP_406390477.1 BCCT family transporter -
  OG844_RS14485 (OG844_14490) - 3176029..3177363 (-) 1335 WP_406390479.1 M14 family metallocarboxypeptidase -
  OG844_RS14490 (OG844_14495) cytR 3177572..3178627 (+) 1056 WP_406390480.1 LacI family DNA-binding transcriptional regulator Regulator
  OG844_RS14495 (OG844_14500) - 3178590..3179492 (-) 903 WP_406390481.1 oxygenase MpaB family protein -
  OG844_RS14500 (OG844_14505) - 3179805..3180683 (+) 879 WP_406390483.1 oxygenase MpaB family protein -
  OG844_RS14505 (OG844_14510) - 3180797..3181171 (+) 375 Protein_2881 aldehyde dehydrogenase family protein -
  OG844_RS14510 (OG844_14515) - 3181178..3181810 (-) 633 WP_406390484.1 TetR/AcrR family transcriptional regulator -
  OG844_RS14515 (OG844_14520) - 3181912..3182079 (+) 168 Protein_2883 acyl-CoA dehydrogenase -
  OG844_RS14520 (OG844_14525) - 3182082..3183335 (-) 1254 Protein_2884 AMP-binding protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37691.58 Da        Isoelectric Point: 5.4664

>NTDB_id=666525 OG844_RS14490 WP_406390480.1 3177572..3178627(+) (cytR) [Streptomyces sp. NBC_00887]
MPDPTRDPQRDARPTLEAVAARAGVSRATASRVVNGGAGVRQPLVDQVRKAVDELGYIPNHAARTLVTRRNGAVAVIIDE
PEVRIFSDPFFSRQIRGISRELTAHDAQLVLLLVEGSGDFDRVTRYLAGGHVDGALAFSLHTDDELPSIIRRFGVPTVYG
GRPERPSPGTEAAAPPVPYVDCDNRGGAREAVRHLVSLGRRRIAHIAGPRDQTSALDRIAGYQDVLPDADPALVARGDFT
TEGGARAMEELLAACPDLDAVFASNDLMASGALRVLHDRGIRVPEDVALVGFDDLESVAGTTEPPLTTVRQDIEGMGRLM
VRLLMERLNSGTGEWPASVITPTELVRRASA

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=666525 OG844_RS14490 WP_406390480.1 3177572..3178627(+) (cytR) [Streptomyces sp. NBC_00887]
TTGCCCGATCCGACCCGCGATCCGCAGCGTGACGCCCGGCCCACCCTGGAGGCCGTGGCGGCCCGCGCGGGCGTGTCCCG
GGCGACGGCGTCCCGTGTCGTCAACGGCGGTGCAGGAGTGCGGCAGCCGCTGGTGGACCAGGTGCGCAAGGCGGTCGACG
AGCTCGGCTACATCCCGAACCACGCCGCACGCACCCTGGTCACCCGGCGCAACGGTGCGGTCGCCGTGATCATCGACGAA
CCCGAGGTCAGGATCTTCTCCGACCCGTTCTTCTCCCGCCAGATCCGTGGGATCAGCCGCGAACTGACTGCGCACGACGC
CCAGCTGGTGCTGCTCCTGGTGGAGGGCAGCGGCGACTTCGACCGCGTGACCCGCTATCTGGCCGGTGGTCATGTGGACG
GCGCACTGGCCTTCTCACTGCACACGGACGACGAGCTGCCGTCGATCATCCGGCGGTTCGGTGTGCCGACGGTCTACGGC
GGCCGCCCCGAGCGCCCGTCGCCGGGCACGGAAGCCGCCGCGCCGCCCGTGCCGTACGTCGACTGCGACAACCGGGGCGG
CGCCCGTGAGGCCGTACGTCATCTGGTCTCGCTCGGCCGGCGACGGATCGCCCACATCGCCGGACCGCGCGACCAGACCT
CCGCGCTCGACCGGATCGCCGGCTATCAGGATGTACTGCCCGACGCCGATCCTGCGCTGGTGGCGCGCGGCGACTTCACC
ACCGAGGGTGGCGCGCGGGCGATGGAGGAACTGCTGGCGGCCTGTCCGGATCTGGATGCCGTCTTCGCCTCCAACGACCT
GATGGCTTCGGGGGCCCTGCGGGTGCTCCACGACCGGGGGATCCGGGTGCCGGAGGACGTGGCACTCGTCGGTTTCGACG
ACCTGGAGTCGGTGGCGGGGACCACCGAACCTCCCCTGACGACGGTCCGTCAGGACATCGAAGGAATGGGACGGTTGATG
GTCCGGCTGCTCATGGAGCGGCTGAACAGCGGTACGGGCGAGTGGCCGGCGTCCGTGATCACCCCGACCGAACTGGTCCG
TCGCGCCTCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(15-60)

Periplasmic binding protein-like domain (Peripla_BP_3)

(192-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.752

100

0.368