Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG05_RS05425 Genome accession   NZ_CP094079
Coordinates   1131625..1132029 (-) Length   134 a.a.
NCBI ID   WP_245070194.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1126625..1137029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG05_RS05380 (MPG05_05380) - 1126796..1127881 (-) 1086 WP_245070184.1 hypothetical protein -
  MPG05_RS05385 (MPG05_05385) - 1127871..1128656 (-) 786 Protein_1045 hypothetical protein -
  MPG05_RS05390 (MPG05_05390) - 1128656..1129042 (-) 387 WP_245070186.1 DUF1294 domain-containing protein -
  MPG05_RS05395 (MPG05_05395) - 1129374..1129535 (-) 162 WP_180370962.1 lysozyme -
  MPG05_RS05400 (MPG05_05400) - 1129555..1129800 (-) 246 WP_014535438.1 lysozyme -
  MPG05_RS05405 (MPG05_05405) - 1129891..1130055 (-) 165 WP_245070188.1 lysozyme -
  MPG05_RS05410 (MPG05_05410) - 1130066..1130626 (-) 561 WP_245070190.1 hypothetical protein -
  MPG05_RS05415 (MPG05_05415) - 1130610..1130948 (-) 339 WP_017280149.1 hypothetical protein -
  MPG05_RS05420 (MPG05_05420) - 1131135..1131497 (-) 363 WP_245070192.1 tetratricopeptide repeat protein -
  MPG05_RS05425 (MPG05_05425) dprB 1131625..1132029 (-) 405 WP_245070194.1 Holliday junction resolvase RuvX Machinery gene
  MPG05_RS05430 (MPG05_05430) dprA 1132026..1132826 (-) 801 WP_245070196.1 DNA-processing protein DprA Machinery gene
  MPG05_RS05435 (MPG05_05435) minE 1132838..1133071 (-) 234 WP_130777953.1 cell division topological specificity factor MinE -
  MPG05_RS05440 (MPG05_05440) minD 1133068..1133874 (-) 807 WP_245070198.1 septum site-determining protein MinD -
  MPG05_RS05445 (MPG05_05445) ilvC 1133899..1134891 (-) 993 WP_245070200.1 ketol-acid reductoisomerase -
  MPG05_RS05455 (MPG05_05455) - 1135140..1135922 (+) 783 WP_245070202.1 NAD+ synthase -
  MPG05_RS05460 (MPG05_05460) - 1135919..1136857 (+) 939 WP_245070204.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15250.79 Da        Isoelectric Point: 9.1283

>NTDB_id=666525 MPG05_RS05425 WP_245070194.1 1131625..1132029(-) (dprB) [Helicobacter pylori strain Hpfe100]
MILACDVGLKRIGIAALLNGVILPLEAILRYNRNQASRDLSDLLREKNIQVLVVGKPNESCADMNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRIAIKDGRLDSLSACRILERYYQQVLKDR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666525 MPG05_RS05425 WP_245070194.1 1131625..1132029(-) (dprB) [Helicobacter pylori strain Hpfe100]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATTGCTGCACTTTTAAACGGCGTTATTTTACCTTTAGAAGC
GATTTTACGCTACAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAACGAAAGCTGTGCGGACATGAACGCACGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGAT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTATCAGCAGGTTTTGAAAGATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

92.481

99.254

0.918