Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG05_RS00010 Genome accession   NZ_CP094079
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245070492.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe100     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG05_RS00005 (MPG05_00005) dnaA 1..1368 (+) 1368 WP_245070491.1 chromosomal replication initiator protein DnaA -
  MPG05_RS00010 (MPG05_00010) comH 1589..3028 (+) 1440 WP_245070492.1 competence protein Machinery gene
  MPG05_RS00020 (MPG05_00020) - 3206..3958 (+) 753 WP_245070493.1 exodeoxyribonuclease III -
  MPG05_RS00025 (MPG05_00025) - 3955..4590 (-) 636 WP_015642211.1 outer membrane protein -
  MPG05_RS00030 (MPG05_00030) - 4594..4947 (-) 354 WP_053459829.1 hypothetical protein -
  MPG05_RS00035 (MPG05_00035) recG 5029..6894 (+) 1866 WP_245070494.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54933.96 Da        Isoelectric Point: 7.4804

>NTDB_id=666514 MPG05_RS00010 WP_245070492.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe100]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRPTIPRNTQIVFSSKELKESHPHQMPSLNAPIQKPQNKPTSSQQSLQNFPYPESKLGSKNPKNSLLQPL
ATPNKISSANEVKTPTNDTKPPLKHSSEDQENNLFIAPPTEKTLPNNTPNADINEHHESNENRDNAEKQAIRDPNIKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIKEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETNELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666514 MPG05_RS00010 WP_245070492.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe100]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCTCTTGTAATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCCCTACTATTCCCAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGTCGCACCCACACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCTTCAAAACTTTCCTTACCCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTA
GCTACTCCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAAGCATTCTTC
AGAAGATCAAGAAAACAACCTTTTCATAGCACCACCCACTGAAAAAACGCTCCCTAACAATACCCCTAACGCTGATATTA
ATGAACACCATGAAAGCAATGAGAATAGGGATAATGCGGAAAAACAAGCGATTAGAGATCCTAATATTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACCTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTCATAAAAGAGCCTTT
AAAACAAGCATGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAGCGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTCTATGAAACCAACGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTAAGTATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.693

100

0.927