Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF83_RS06955 Genome accession   NZ_CP094078
Coordinates   1445570..1446883 (-) Length   437 a.a.
NCBI ID   WP_245053878.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe101     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1440570..1451883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS06925 (MPF83_06925) nadC 1441033..1441854 (-) 822 WP_245053870.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF83_RS06930 (MPF83_06930) nadA 1441854..1442864 (-) 1011 WP_025223235.1 quinolinate synthase NadA -
  MPF83_RS06935 (MPF83_06935) - 1442854..1443657 (-) 804 WP_245053872.1 phosphatidylserine decarboxylase -
  MPF83_RS06940 (MPF83_06940) - 1443654..1444157 (-) 504 WP_000953083.1 hypothetical protein -
  MPF83_RS06945 (MPF83_06945) - 1444170..1444664 (-) 495 WP_245053874.1 hypothetical protein -
  MPF83_RS06950 (MPF83_06950) mqnP 1444657..1445499 (-) 843 WP_245053876.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF83_RS06955 (MPF83_06955) comEC/comE3 1445570..1446883 (-) 1314 WP_245053878.1 ComEC/Rec2 family competence protein Machinery gene
  MPF83_RS06960 (MPF83_06960) - 1446880..1448340 (-) 1461 WP_245053880.1 replicative DNA helicase -
  MPF83_RS06965 (MPF83_06965) - 1448351..1449745 (-) 1395 WP_245053882.1 NAD(P)H-hydrate dehydratase -
  MPF83_RS06970 (MPF83_06970) crdS 1449748..1450950 (-) 1203 WP_245054873.1 copper-sensing histidine kinase CrdS -
  MPF83_RS06975 (MPF83_06975) crdR 1450916..1451557 (-) 642 WP_245053884.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50167.25 Da        Isoelectric Point: 9.9128

>NTDB_id=666509 MPF83_RS06955 WP_245053878.1 1445570..1446883(-) (comEC/comE3) [Helicobacter pylori strain Hpfe101]
MKDKTFQGAFELLITPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLRLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASMYFLFSLFYAPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQVISLS
ALVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGVHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666509 MPF83_RS06955 WP_245053878.1 1445570..1446883(-) (comEC/comE3) [Helicobacter pylori strain Hpfe101]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTATAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAGGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGTAAAATCAAACCTTGCTC
GTTTTTGGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTATTAGCTATTAGCGGGTTCCATTTAGGGATTTT
GAGCGCGAGCATGTATTTTCTTTTCTCTCTTTTTTATGCCCCTTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGGTCATAAGCTTAAGT
GCGTTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTTTAAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTGAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945