Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPF83_RS05410 Genome accession   NZ_CP094078
Coordinates   1133752..1134156 (-) Length   134 a.a.
NCBI ID   WP_245053528.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe101     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128752..1139156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS05370 (MPF83_05370) - 1128899..1130014 (-) 1116 WP_245053517.1 hypothetical protein -
  MPF83_RS05375 (MPF83_05375) - 1130004..1130789 (-) 786 WP_245053519.1 hypothetical protein -
  MPF83_RS05380 (MPF83_05380) - 1130789..1131175 (-) 387 WP_245053521.1 DUF1294 domain-containing protein -
  MPF83_RS05385 (MPF83_05385) - 1131503..1131928 (-) 426 WP_245054866.1 hypothetical protein -
  MPF83_RS05390 (MPF83_05390) - 1132193..1132753 (-) 561 WP_245053523.1 hypothetical protein -
  MPF83_RS05395 (MPF83_05395) - 1132737..1133075 (-) 339 WP_180482951.1 hypothetical protein -
  MPF83_RS05400 (MPF83_05400) - 1133263..1133358 (-) 96 WP_245053525.1 hypothetical protein -
  MPF83_RS05405 (MPF83_05405) - 1133412..1133585 (-) 174 WP_245053526.1 hypothetical protein -
  MPF83_RS05410 (MPF83_05410) dprB 1133752..1134156 (-) 405 WP_245053528.1 Holliday junction resolvase RuvX Machinery gene
  MPF83_RS05415 (MPF83_05415) dprA 1134153..1134953 (-) 801 WP_245053530.1 DNA-processing protein DprA Machinery gene
  MPF83_RS05420 (MPF83_05420) minE 1134965..1135198 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPF83_RS05425 (MPF83_05425) minD 1135195..1136001 (-) 807 WP_245053532.1 septum site-determining protein MinD -
  MPF83_RS05430 (MPF83_05430) ilvC 1136025..1137017 (-) 993 WP_245053534.1 ketol-acid reductoisomerase -
  MPF83_RS05440 (MPF83_05440) - 1137264..1138046 (+) 783 WP_245053536.1 NAD+ synthase -
  MPF83_RS05445 (MPF83_05445) - 1138043..1138981 (+) 939 WP_245053538.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15301.85 Da        Isoelectric Point: 10.1285

>NTDB_id=666505 MPF83_RS05410 WP_245053528.1 1133752..1134156(-) (dprB) [Helicobacter pylori strain Hpfe101]
MILACDVGLKRIGIATLLNGVILPLKAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNVRIEHFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSAYRILERYCQQVLKNR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666505 MPF83_RS05410 WP_245053528.1 1133752..1134156(-) (dprB) [Helicobacter pylori strain Hpfe101]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTACGCTTTTAAACGGCGTTATCTTGCCTTTAAAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAATGTGCGCATTGAACATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAGGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTATAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.233

99.254

0.925