Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   MPF83_RS00715 Genome accession   NZ_CP094078
Coordinates   149072..149815 (+) Length   247 a.a.
NCBI ID   WP_245054173.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe101     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 144072..154815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS00690 (MPF83_00690) panD 146222..146572 (+) 351 WP_245054169.1 aspartate 1-decarboxylase -
  MPF83_RS00695 (MPF83_00695) - 146583..146876 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPF83_RS00700 (MPF83_00700) - 146876..147871 (+) 996 WP_245054805.1 PDZ domain-containing protein -
  MPF83_RS00705 (MPF83_00705) comB6 147879..148934 (+) 1056 WP_245054170.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF83_RS00710 (MPF83_00710) comB7 148950..149075 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPF83_RS00715 (MPF83_00715) comB8 149072..149815 (+) 744 WP_245054173.1 virB8 family protein Machinery gene
  MPF83_RS00720 (MPF83_00720) comB9 149815..150780 (+) 966 WP_245054175.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF83_RS00725 (MPF83_00725) comB10 150773..151909 (+) 1137 WP_245054177.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF83_RS00730 (MPF83_00730) - 151979..153391 (+) 1413 WP_245054179.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  MPF83_RS00735 (MPF83_00735) gmd 153406..154551 (+) 1146 WP_245054181.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28702.93 Da        Isoelectric Point: 8.9546

>NTDB_id=666497 MPF83_RS00715 WP_245054173.1 149072..149815(+) (comB8) [Helicobacter pylori strain Hpfe101]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
VQSHLEREVHIVNIAIYQQDNNSIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=666497 MPF83_RS00715 WP_245054173.1 149072..149815(+) (comB8) [Helicobacter pylori strain Hpfe101]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTATTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAAGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GTGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACTCCATTGCGAGCGT
TTCTATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCAACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972