Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB6   Type   Machinery gene
Locus tag   MPF83_RS00705 Genome accession   NZ_CP094078
Coordinates   147879..148934 (+) Length   351 a.a.
NCBI ID   WP_245054170.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe101     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 142879..153934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS00670 (MPF83_00670) - 142952..143155 (-) 204 WP_245054165.1 hypothetical protein -
  MPF83_RS00675 (MPF83_00675) - 143302..143715 (+) 414 WP_001023005.1 universal stress protein -
  MPF83_RS00680 (MPF83_00680) - 143735..144010 (+) 276 WP_140447309.1 ATP-dependent Clp protease adaptor ClpS -
  MPF83_RS00685 (MPF83_00685) - 144010..146232 (+) 2223 WP_245054167.1 ATP-dependent Clp protease ATP-binding subunit -
  MPF83_RS00690 (MPF83_00690) panD 146222..146572 (+) 351 WP_245054169.1 aspartate 1-decarboxylase -
  MPF83_RS00695 (MPF83_00695) - 146583..146876 (+) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  MPF83_RS00700 (MPF83_00700) - 146876..147871 (+) 996 WP_245054805.1 PDZ domain-containing protein -
  MPF83_RS00705 (MPF83_00705) comB6 147879..148934 (+) 1056 WP_245054170.1 P-type conjugative transfer protein TrbL Machinery gene
  MPF83_RS00710 (MPF83_00710) comB7 148950..149075 (+) 126 WP_001217874.1 hypothetical protein Machinery gene
  MPF83_RS00715 (MPF83_00715) comB8 149072..149815 (+) 744 WP_245054173.1 virB8 family protein Machinery gene
  MPF83_RS00720 (MPF83_00720) comB9 149815..150780 (+) 966 WP_245054175.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  MPF83_RS00725 (MPF83_00725) comB10 150773..151909 (+) 1137 WP_245054177.1 DNA type IV secretion system protein ComB10 Machinery gene
  MPF83_RS00730 (MPF83_00730) - 151979..153391 (+) 1413 WP_245054179.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 39921.91 Da        Isoelectric Point: 8.8165

>NTDB_id=666495 MPF83_RS00705 WP_245054170.1 147879..148934(+) (comB6) [Helicobacter pylori strain Hpfe101]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSVSALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVVCLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSTNLSQNALNSLQYITTPPASSPISTSTRESASKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=666495 MPF83_RS00705 WP_245054170.1 147879..148934(+) (comB6) [Helicobacter pylori strain Hpfe101]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTTTAACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGCT
TGAAAGAACAGAATTTCTTCAGCGTTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGATTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGTGTGCTG
TTTGCAATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGTGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGCTGG
TGGGCTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGTCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCACCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACACCACCCGCTTCTTCTCCTATTTCTACTTCTACAAGAGAAAGCGCCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

TrbL/VirB6 plasmid conjugal transfer protein (TrbL)

(43-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB6 Helicobacter pylori 26695

96.581

100

0.966