Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPF83_RS00010 Genome accession   NZ_CP094078
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245054010.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe101     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF83_RS00005 (MPF83_00005) dnaA 1..1368 (+) 1368 WP_024774105.1 chromosomal replication initiator protein DnaA -
  MPF83_RS00010 (MPF83_00010) comH 1589..3028 (+) 1440 WP_245054010.1 competence protein Machinery gene
  MPF83_RS00020 (MPF83_00020) - 3206..3958 (+) 753 WP_245054012.1 exodeoxyribonuclease III -
  MPF83_RS00025 (MPF83_00025) - 3955..4590 (-) 636 WP_015642211.1 outer membrane protein -
  MPF83_RS00030 (MPF83_00030) - 4594..4947 (-) 354 WP_000837005.1 hypothetical protein -
  MPF83_RS00035 (MPF83_00035) recG 5029..6894 (+) 1866 WP_245054014.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 55000.91 Da        Isoelectric Point: 7.0810

>NTDB_id=666493 MPF83_RS00010 WP_245054010.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe101]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETILNPNRPTIPKNTQIVFSSKELKEPHQHQMPSLNAPIQKPQNKPTSSQQSPQNFSYSESKLGFKNPKNSLLQPL
ATPNKISSANEVKTPTNDTKPPLRHSSEDQENNLFVTPPTEKTLPNNTPNADINEHHESNENRDNVEKQTIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNNFTILQAR
SSTEKCKRARARKDGTTRQCYLIEEPLKQAWESEYQITTQLVKATYERPKQDDQTEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRLKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666493 MPF83_RS00010 WP_245054010.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe101]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGATCTTAAACCCTAACCGCCCTACTATTCCTAAAAACACCCAAATTGTTTTTTCTTCAAAAGA
ATTGAAAGAGCCACACCAACACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTCCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTTTAAAAACCCTAAAAACAGCCTTTTACAGCCTTTA
GCCACTCCTAATAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAGGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACACCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATATTA
ATGAACACCATGAAAGCAATGAGAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAACA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACAATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGCGCGAAAAGACGGCACGACCAGGCAATGCTATCTGATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCCACTTATGAGCGCCCCAAACAAGACGATC
AAACAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTGGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGTTTAAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAAGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

91.441

100

0.914