Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG464_RS25800 Genome accession   NZ_CP108781
Coordinates   5824323..5825003 (+) Length   226 a.a.
NCBI ID   WP_093705485.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00890     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5819323..5830003
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG464_RS25780 (OG464_25770) - 5819693..5819923 (-) 231 WP_018105354.1 hypothetical protein -
  OG464_RS25785 (OG464_25775) - 5820357..5822477 (+) 2121 WP_132903988.1 type IIA DNA topoisomerase subunit B -
  OG464_RS25790 (OG464_25780) - 5822648..5823166 (+) 519 WP_329029286.1 DUF1453 domain-containing protein -
  OG464_RS25795 (OG464_25785) - 5823163..5824326 (+) 1164 WP_329029287.1 histidine kinase -
  OG464_RS25800 (OG464_25790) vraR 5824323..5825003 (+) 681 WP_093705485.1 response regulator transcription factor Regulator
  OG464_RS25805 (OG464_25795) - 5825135..5825578 (+) 444 WP_329030820.1 DUF485 domain-containing protein -
  OG464_RS25810 (OG464_25800) - 5825575..5827167 (+) 1593 WP_329029288.1 cation acetate symporter -
  OG464_RS25815 (OG464_25805) - 5827184..5827678 (-) 495 WP_330454321.1 hypothetical protein -
  OG464_RS25820 (OG464_25810) - 5827896..5828918 (+) 1023 WP_330454323.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24033.45 Da        Isoelectric Point: 4.8636

>NTDB_id=666492 OG464_RS25800 WP_093705485.1 5824323..5825003(+) (vraR) [Streptomyces sp. NBC_00890]
MTARVVVADDQAVVREGIVMLLGLLPGIEVVGSAKDGEEAVAQVAEHAPDVVLMDLRMPRCDGVEATRRIREEFPGTQVV
VLTTFADDDSLFPALRAGARGYLTKDAGGDEIVRAVEAVLSGEAGLSPTVQRRLLERVTTGPPEAGGGGPEPELPDGMTP
REAEVLVLIAEGMSNADIARSLHISQATVKSHINNLFAKAGLRDRAQAVRYAYMRGLVRPPGRSFT

Nucleotide


Download         Length: 681 bp        

>NTDB_id=666492 OG464_RS25800 WP_093705485.1 5824323..5825003(+) (vraR) [Streptomyces sp. NBC_00890]
GTGACAGCGCGGGTGGTGGTGGCCGACGATCAGGCGGTGGTGCGGGAGGGCATCGTCATGCTGCTGGGACTGCTGCCGGG
AATCGAGGTGGTCGGATCGGCCAAGGACGGGGAGGAAGCGGTCGCGCAGGTGGCCGAGCACGCGCCGGACGTCGTGCTGA
TGGATCTGCGGATGCCTCGCTGCGACGGGGTGGAGGCGACCCGGCGCATCAGGGAGGAGTTCCCCGGTACGCAGGTGGTG
GTGCTCACGACGTTCGCGGACGACGACTCGTTGTTTCCCGCGCTCCGGGCGGGCGCGCGGGGGTACCTGACCAAGGATGC
CGGGGGCGACGAGATCGTGCGGGCGGTCGAGGCCGTGCTCTCGGGGGAGGCCGGGCTTTCGCCCACAGTGCAGCGCCGAC
TGCTGGAGCGGGTGACCACGGGGCCTCCCGAGGCCGGTGGCGGGGGCCCTGAGCCGGAGCTGCCGGACGGGATGACCCCT
CGTGAGGCCGAGGTGCTGGTCCTGATCGCCGAGGGGATGTCCAACGCGGACATCGCCCGCTCCCTCCACATCTCGCAGGC
CACCGTGAAGAGCCATATCAACAACCTCTTCGCCAAGGCGGGGCTCCGCGACCGGGCCCAAGCGGTGCGTTACGCCTACA
TGCGGGGTCTGGTCCGTCCACCTGGGAGGTCCTTCACCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.813

96.903

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

37.838

98.23

0.372