Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG56_RS07170 Genome accession   NZ_CP094076
Coordinates   1510157..1510438 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain Hpfe102     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1505157..1515438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS07150 (MPG56_07150) - 1505868..1507208 (-) 1341 WP_245043585.1 hypothetical protein -
  MPG56_RS07160 (MPG56_07160) comB4 1507529..1509892 (-) 2364 WP_245043587.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG56_RS07165 (MPG56_07165) comB3 1509894..1510157 (-) 264 WP_000584955.1 hypothetical protein Machinery gene
  MPG56_RS07170 (MPG56_07170) comB2 1510157..1510438 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  MPG56_RS07175 (MPG56_07175) - 1510583..1511410 (-) 828 WP_245043589.1 DUF5718 family protein -
  MPG56_RS07180 (MPG56_07180) - 1511501..1512553 (-) 1053 WP_245043591.1 MnmA/TRMU family protein -
  MPG56_RS07185 (MPG56_07185) dnaG 1512550..1514229 (-) 1680 WP_245043593.1 DNA primase -
  MPG56_RS07190 (MPG56_07190) groES 1514515..1514871 (+) 357 WP_000671946.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=666492 MPG56_RS07170 WP_001272686.1 1510157..1510438(-) (comB2) [Helicobacter pylori strain Hpfe102]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666492 MPG56_RS07170 WP_001272686.1 1510157..1510438(-) (comB2) [Helicobacter pylori strain Hpfe102]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989