Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG464_RS25680 Genome accession   NZ_CP108781
Coordinates   5793732..5794526 (-) Length   264 a.a.
NCBI ID   WP_026171816.1    Uniprot ID   A0ABY6PP80
Organism   Streptomyces sp. NBC_00890     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5788732..5799526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG464_RS25665 (OG464_25655) - 5789035..5789679 (+) 645 WP_405884856.1 GNAT family N-acetyltransferase -
  OG464_RS25670 (OG464_25660) - 5789740..5791596 (+) 1857 WP_330454292.1 IucA/IucC family siderophore biosynthesis protein -
  OG464_RS25675 (OG464_25665) - 5791647..5793617 (+) 1971 WP_018520798.1 ATP-dependent DNA helicase -
  OG464_RS25680 (OG464_25670) dinR/lexA 5793732..5794526 (-) 795 WP_026171816.1 transcriptional repressor LexA Regulator
  OG464_RS25685 (OG464_25675) nrdR 5795034..5795546 (+) 513 WP_018520799.1 transcriptional regulator NrdR -
  OG464_RS25690 (OG464_25680) - 5795711..5798614 (+) 2904 WP_329029269.1 vitamin B12-dependent ribonucleotide reductase -
  OG464_RS25695 (OG464_25685) - 5798681..5799217 (-) 537 WP_330454293.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28592.36 Da        Isoelectric Point: 6.9854

>NTDB_id=666491 OG464_RS25680 WP_026171816.1 5793732..5794526(-) (dinR/lexA) [Streptomyces sp. NBC_00890]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTEGPEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=666491 OG464_RS25680 WP_026171816.1 5793732..5794526(-) (dinR/lexA) [Streptomyces sp. NBC_00890]
GTGACCACCACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGCCCGGAGCCCGGGCGCCCAGCGCGCTCGCTCCCCGGACGACCTCCCGGAATCCGGG
CCGACAGCTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGCGGCTACCCG
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTCTCCAGCACCTCCTCGGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTTCTCCGCCGCGACCCGCACCGCCCCCGGGCCTACGAGGTGCGCGGCTCCGACCAGCCGAGCACCCAGCCGA
CGGACACCACGGGCAAGCCCGCCGCCTCGTACGTGCCTCTGGTCGGCCGGATCGCCGCAGGTGGGCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTCGGCGACGGCGAGCTCTTCGTGCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCGGCCATCTGTGACGGCGACTGGGTCACCGTCCGGCGCCAGCCCGTCGCGGAGAACGGGGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACCGTGAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCCCACAAC
GCCGCGTACCAGCCGATTCCCGGCGACGAGGCGACGATCCTCGGCAAGGTCGTCGCGGTGCTGCGCCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371