Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG56_RS07025 Genome accession   NZ_CP094076
Coordinates   1474111..1475424 (-) Length   437 a.a.
NCBI ID   WP_245043556.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469111..1480424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS06995 (MPG56_06995) nadC 1469574..1470395 (-) 822 WP_220823519.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG56_RS07000 (MPG56_07000) nadA 1470395..1471405 (-) 1011 WP_245043550.1 quinolinate synthase NadA -
  MPG56_RS07005 (MPG56_07005) - 1471392..1472198 (-) 807 WP_245043552.1 phosphatidylserine decarboxylase -
  MPG56_RS07010 (MPG56_07010) - 1472195..1472698 (-) 504 WP_000953102.1 hypothetical protein -
  MPG56_RS07015 (MPG56_07015) - 1472711..1473205 (-) 495 WP_245043554.1 hypothetical protein -
  MPG56_RS07020 (MPG56_07020) mqnP 1473198..1474040 (-) 843 WP_231264506.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG56_RS07025 (MPG56_07025) comEC/comE3 1474111..1475424 (-) 1314 WP_245043556.1 ComEC/Rec2 family competence protein Machinery gene
  MPG56_RS07030 (MPG56_07030) - 1475421..1476887 (-) 1467 WP_245043558.1 replicative DNA helicase -
  MPG56_RS07035 (MPG56_07035) - 1476898..1478292 (-) 1395 WP_245043560.1 NAD(P)H-hydrate dehydratase -
  MPG56_RS07040 (MPG56_07040) crdS 1478295..1479497 (-) 1203 WP_245044501.1 copper-sensing histidine kinase CrdS -
  MPG56_RS07045 (MPG56_07045) crdR 1479463..1480104 (-) 642 WP_245043562.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50122.15 Da        Isoelectric Point: 9.8515

>NTDB_id=666488 MPG56_RS07025 WP_245043556.1 1474111..1475424(-) (comEC/comE3) [Helicobacter pylori strain Hpfe102]
MKDKIFQGAFELLTTPKEYLLCGVILSLLLALNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLIRKQDFKSHWRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQIISLS
AIVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666488 MPG56_RS07025 WP_245043556.1 1474111..1475424(-) (comEC/comE3) [Helicobacter pylori strain Hpfe102]
TTGAAAGATAAAATTTTTCAGGGGGCGTTTGAACTTCTCACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCACTTAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATT
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAATACGAAAACAGGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGCAATTTATATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAAGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTCCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCCTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCTTTTCAGATCATAAGCTTAAGC
GCGATAGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTAGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACAATTTCGGTTTTTTCGCCTTTATGGCTTTTGGGGGCGCATTTATTTTTAACG
ATTCTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.195

100

0.952