Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG56_RS05570 Genome accession   NZ_CP094076
Coordinates   1173293..1173697 (-) Length   134 a.a.
NCBI ID   WP_219025789.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe102     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1168293..1178697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG56_RS05525 (MPG56_05525) - 1169119..1169904 (-) 786 WP_245043395.1 hypothetical protein -
  MPG56_RS05530 (MPG56_05530) - 1169910..1170291 (-) 382 Protein_1083 DUF1294 domain-containing protein -
  MPG56_RS05535 (MPG56_05535) - 1170381..1170584 (-) 204 WP_245044512.1 hypothetical protein -
  MPG56_RS05540 (MPG56_05540) - 1170637..1170798 (-) 162 WP_172635512.1 lysozyme -
  MPG56_RS05545 (MPG56_05545) - 1170818..1171063 (-) 246 WP_245043396.1 lysozyme -
  MPG56_RS05550 (MPG56_05550) - 1171113..1171295 (-) 183 WP_245043397.1 lysozyme -
  MPG56_RS05555 (MPG56_05555) - 1171306..1171866 (-) 561 WP_245043398.1 hypothetical protein -
  MPG56_RS05560 (MPG56_05560) - 1171850..1172188 (-) 339 WP_000699920.1 hypothetical protein -
  MPG56_RS05565 (MPG56_05565) - 1172319..1173200 (-) 882 WP_245043399.1 tetratricopeptide repeat protein -
  MPG56_RS05570 (MPG56_05570) dprB 1173293..1173697 (-) 405 WP_219025789.1 Holliday junction resolvase RuvX Machinery gene
  MPG56_RS05575 (MPG56_05575) dprA 1173694..1174494 (-) 801 WP_245043400.1 DNA-processing protein DprA Machinery gene
  MPG56_RS05580 (MPG56_05580) minE 1174506..1174739 (-) 234 WP_000051412.1 cell division topological specificity factor MinE -
  MPG56_RS05585 (MPG56_05585) minD 1174736..1175542 (-) 807 WP_001019101.1 septum site-determining protein MinD -
  MPG56_RS05590 (MPG56_05590) ilvC 1175561..1176553 (-) 993 WP_245044482.1 ketol-acid reductoisomerase -
  MPG56_RS05600 (MPG56_05600) - 1176802..1177584 (+) 783 WP_245043401.1 NAD+ synthase -
  MPG56_RS05605 (MPG56_05605) - 1177581..1178519 (+) 939 WP_245043402.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15224.78 Da        Isoelectric Point: 9.7521

>NTDB_id=666484 MPG56_RS05570 WP_219025789.1 1173293..1173697(-) (dprB) [Helicobacter pylori strain Hpfe102]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666484 MPG56_RS05570 WP_219025789.1 1173293..1173697(-) (dprB) [Helicobacter pylori strain Hpfe102]
GTGATTTTGGCATGCGATGTGGGGCTGAAGCGCATTGGGATTGCTGCGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGC
GTTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.455

98.507

0.94