Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPG31_RS07045 Genome accession   NZ_CP094074
Coordinates   1473316..1474629 (-) Length   437 a.a.
NCBI ID   WP_245015213.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe103     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1468316..1479629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG31_RS07015 (MPG31_07015) nadC 1468779..1469600 (-) 822 WP_245015208.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPG31_RS07020 (MPG31_07020) nadA 1469600..1470610 (-) 1011 WP_245015209.1 quinolinate synthase NadA -
  MPG31_RS07025 (MPG31_07025) - 1470600..1471403 (-) 804 WP_245015210.1 phosphatidylserine decarboxylase -
  MPG31_RS07030 (MPG31_07030) - 1471400..1471903 (-) 504 WP_245015211.1 helix-turn-helix domain-containing protein -
  MPG31_RS07035 (MPG31_07035) - 1471916..1472410 (-) 495 WP_014726917.1 hypothetical protein -
  MPG31_RS07040 (MPG31_07040) mqnP 1472403..1473287 (-) 885 WP_245015212.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPG31_RS07045 (MPG31_07045) comEC/comE3 1473316..1474629 (-) 1314 WP_245015213.1 ComEC/Rec2 family competence protein Machinery gene
  MPG31_RS07050 (MPG31_07050) - 1474626..1476086 (-) 1461 WP_245015214.1 replicative DNA helicase -
  MPG31_RS07055 (MPG31_07055) - 1476097..1477491 (-) 1395 WP_245015215.1 NAD(P)H-hydrate dehydratase -
  MPG31_RS07060 (MPG31_07060) crdS 1477494..1478696 (-) 1203 WP_245015727.1 copper-sensing histidine kinase CrdS -
  MPG31_RS07065 (MPG31_07065) crdR 1478662..1479303 (-) 642 WP_001169802.1 copper response regulator transcription factor CrdR -
  MPG31_RS07070 (MPG31_07070) - 1479390..1479614 (-) 225 Protein_1385 restriction endonuclease subunit R -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50161.10 Da        Isoelectric Point: 9.9128

>NTDB_id=666467 MPG31_RS07045 WP_245015213.1 1473316..1474629(-) (comEC/comE3) [Helicobacter pylori strain Hpfe103]
MKDKTFQGAFELLATPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLRSCFFQTYSFSLTRKQDSKSHWRRFIDSAHSSVLVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLARSFQVISLS
TLVFLNMLIIVHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDGILNMPLTIPTISVFSPLWLLGAHLFLT
ILSVRFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=666467 MPG31_RS07045 WP_245015213.1 1473316..1474629(-) (comEC/comE3) [Helicobacter pylori strain Hpfe103]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTGCAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTAGCGTTTAATCTTTATTTAGAGTATTTGAATTACCAAAAGCTTGATTTTTCAAAACCCACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAACTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
ATTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACACGAAAACAAGATTCCAAATCGCATT
GGCGCCGTTTCATTGATAGCGCTCATTCAAGCGTTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCATG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGCGCGATCTTTTCAGGTCATAAGCTTAAGC
ACGCTAGTGTTTTTGAACATGCTCATCATTGTGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
ATTTTGAGCGTGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCAGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945