Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MPG31_RS05575 Genome accession   NZ_CP094074
Coordinates   1170125..1170529 (-) Length   134 a.a.
NCBI ID   WP_245015045.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1165125..1175529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG31_RS05535 (MPG31_05535) - 1165324..1166388 (-) 1065 WP_245015041.1 hypothetical protein -
  MPG31_RS05540 (MPG31_05540) - 1166378..1167163 (-) 786 WP_245015042.1 hypothetical protein -
  MPG31_RS05545 (MPG31_05545) - 1167163..1167549 (-) 387 WP_245015714.1 DUF1294 domain-containing protein -
  MPG31_RS05550 (MPG31_05550) - 1167866..1168426 (-) 561 WP_245015043.1 lysozyme -
  MPG31_RS05555 (MPG31_05555) - 1168565..1169125 (-) 561 WP_154408480.1 hypothetical protein -
  MPG31_RS05560 (MPG31_05560) - 1169109..1169447 (-) 339 WP_180425793.1 hypothetical protein -
  MPG31_RS05565 (MPG31_05565) - 1169633..1169728 (-) 96 WP_229763748.1 hypothetical protein -
  MPG31_RS05570 (MPG31_05570) - 1169848..1169994 (-) 147 WP_245015044.1 tetratricopeptide repeat protein -
  MPG31_RS05575 (MPG31_05575) dprB 1170125..1170529 (-) 405 WP_245015045.1 Holliday junction resolvase RuvX Machinery gene
  MPG31_RS05580 (MPG31_05580) dprA 1170526..1171326 (-) 801 WP_245015046.1 DNA-processing protein DprA Machinery gene
  MPG31_RS05585 (MPG31_05585) minE 1171338..1171571 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  MPG31_RS05590 (MPG31_05590) minD 1171568..1172374 (-) 807 WP_015643076.1 septum site-determining protein MinD -
  MPG31_RS05595 (MPG31_05595) ilvC 1172398..1173390 (-) 993 WP_245015047.1 ketol-acid reductoisomerase -
  MPG31_RS05605 (MPG31_05605) - 1173642..1174424 (+) 783 WP_154462105.1 NAD+ synthase -
  MPG31_RS05610 (MPG31_05610) - 1174421..1175359 (+) 939 WP_245015048.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15247.81 Da        Isoelectric Point: 9.4831

>NTDB_id=666463 MPG31_RS05575 WP_245015045.1 1170125..1170529(-) (dprB) [Helicobacter pylori strain Hpfe103]
MILACDVGLKRIGIAVLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQILKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=666463 MPG31_RS05575 WP_245015045.1 1170125..1170529(-) (dprB) [Helicobacter pylori strain Hpfe103]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGTGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGAGAAAAAAACATTCAGGTGCTGGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGATTTTAAAAAAGC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.284

100

0.933