Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IOMTU433_RS17545 Genome accession   NZ_AP014649
Coordinates   3700969..3701295 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain IOMTU433     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3695969..3706295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOMTU433_RS17525 (IOMTU433_3523) - 3696075..3696704 (-) 630 WP_045544623.1 FHA domain-containing protein -
  IOMTU433_RS17530 (IOMTU433_3524) gspD 3696745..3699015 (-) 2271 WP_045544624.1 type II secretion system secretin GspD -
  IOMTU433_RS17535 (IOMTU433_3525) - 3699057..3699893 (-) 837 WP_045544625.1 type II secretion system protein N -
  IOMTU433_RS17540 (IOMTU433_3526) gspN 3699893..3700636 (-) 744 WP_045544626.1 type II secretion system protein N -
  IOMTU433_RS17545 (IOMTU433_3527) hns 3700969..3701295 (-) 327 WP_000801427.1 H-NS histone family protein Regulator
  IOMTU433_RS17550 (IOMTU433_3528) - 3701490..3701930 (-) 441 WP_000661569.1 thioesterase family protein -
  IOMTU433_RS17555 (IOMTU433_3529) - 3701938..3703131 (-) 1194 WP_045544627.1 membrane protein -
  IOMTU433_RS17560 (IOMTU433_3530) - 3703141..3703980 (-) 840 WP_045544628.1 hypothetical protein -
  IOMTU433_RS17565 (IOMTU433_3531) - 3703989..3704756 (-) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  IOMTU433_RS17570 (IOMTU433_3532) hemC 3704761..3705678 (-) 918 WP_002159654.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=66646 IOMTU433_RS17545 WP_000801427.1 3700969..3701295(-) (hns) [Acinetobacter baumannii strain IOMTU433]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=66646 IOMTU433_RS17545 WP_000801427.1 3700969..3701295(-) (hns) [Acinetobacter baumannii strain IOMTU433]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment