Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   OG464_RS14580 Genome accession   NZ_CP108781
Coordinates   3328323..3329735 (+) Length   470 a.a.
NCBI ID   WP_018520499.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00890     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3323323..3334735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG464_RS14560 (OG464_14545) - 3323368..3324195 (-) 828 WP_093708256.1 sugar phosphate isomerase/epimerase -
  OG464_RS14565 (OG464_14550) - 3324277..3325227 (-) 951 WP_329026577.1 Ppx/GppA phosphatase family protein -
  OG464_RS14570 (OG464_14555) - 3325529..3326311 (+) 783 WP_405884917.1 hypothetical protein -
  OG464_RS14575 (OG464_14560) - 3326325..3328187 (-) 1863 WP_330452658.1 hypothetical protein -
  OG464_RS14580 (OG464_14565) radA/sms 3328323..3329735 (+) 1413 WP_018520499.1 DNA repair protein RadA Machinery gene
  OG464_RS14585 (OG464_14570) disA 3329882..3331006 (+) 1125 WP_026171409.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  OG464_RS14590 (OG464_14575) - 3331056..3331826 (-) 771 WP_330455191.1 hypothetical protein -
  OG464_RS14595 (OG464_14580) - 3332160..3333062 (+) 903 WP_093708251.1 A/G-specific adenine glycosylase -
  OG464_RS14600 (OG464_14585) - 3333379..3333927 (+) 549 WP_018520495.1 SigE family RNA polymerase sigma factor -
  OG464_RS14605 (OG464_14590) - 3333915..3334634 (+) 720 WP_330452659.1 hypothetical protein -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 49559.68 Da        Isoelectric Point: 8.0123

>NTDB_id=666457 OG464_RS14580 WP_018520499.1 3328323..3329735(+) (radA/sms) [Streptomyces sp. NBC_00890]
MAARTKSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEFGGAPAVRTTAAGRVSTAALPIGQVDSRQATARPTGVGE
LDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDEHRTLYVTGEESASQVRMRADRIHAINDHLYLAAETDLSAV
LAHLDAVKPSLLILDSVQTVASPEIEGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKEGAIAGPRLLEHLVDVVLS
FEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGKRPLVAEVQALTVDSQ
IPSPRRTTSGLETSRVSMMLAVLEQRGRISSLGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVG
LAGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGKVPAGMKVTEVADMGDALRALPRRSRAQAPREEDARR

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=666457 OG464_RS14580 WP_018520499.1 3328323..3329735(+) (radA/sms) [Streptomyces sp. NBC_00890]
ATGGCTGCCCGTACGAAATCCGCGAAGGACCGGCCGTCCTATCGCTGCACCGAATGCGGCTGGACCACCGCGAAGTGGCT
CGGCCGTTGCCCCGAGTGCCAGGCGTGGGGGACGGTCGAGGAGTTCGGCGGCGCCCCCGCCGTCCGGACCACGGCCGCGG
GCCGGGTGTCCACCGCCGCCCTGCCCATCGGCCAGGTCGACAGCCGGCAGGCCACGGCCCGGCCCACCGGCGTGGGCGAG
CTGGACCGGGTGCTGGGCGGCGGTCTGGTGCCCGGGGCCGTCGTGCTGCTCGCGGGCGAGCCGGGCGTCGGGAAGTCCAC
GCTGCTGCTGGACGTCGCGGCGAAGGCGGCGAGCGACGAGCACCGCACCCTGTACGTGACCGGCGAGGAGTCCGCCTCCC
AGGTCCGGATGCGGGCCGACCGCATCCACGCGATCAACGACCACCTGTACCTGGCGGCGGAGACCGACCTGTCGGCGGTG
CTCGCCCACCTCGACGCGGTCAAGCCCTCGCTGCTGATCCTGGACTCGGTGCAGACCGTGGCCTCGCCGGAGATCGAGGG
CGCGCCGGGCGGGATGGCGCAGGTCCGCGAGGTGGCGGGGGCGCTGATCCGGGCCTCCAAGGAGCGCGGGATGTCGACGC
TGCTCGTGGGCCACGTCACCAAGGAGGGCGCGATCGCCGGGCCCCGGCTCCTGGAGCACCTGGTGGACGTGGTGCTGTCC
TTCGAGGGCGACCGCCATGCCCGGCTGCGTCTGGTGCGCGGCGTCAAGAACCGGTACGGGGCGACCGACGAGGTCGGCTG
CTTCGAGCTGCACGACGAGGGCATCACGGGCCTCGCCGATCCGTCCGGCCTGTTCCTCACGCGGCGCGACGAGCCGGTGC
CGGGCACCTGCCTGACCGTGACCCTGGAGGGGAAGCGGCCCCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGACTCGCAG
ATCCCCTCGCCGCGGCGCACCACGTCGGGCCTGGAGACGTCCCGGGTGTCGATGATGCTCGCGGTCCTGGAGCAGCGGGG
CCGGATCAGCTCGCTGGGCAAGCGGGACATCTACAGCGCGACGGTGGGCGGCGTGAAGCTGTCCGAGCCGGCCGCCGACC
TGGCCATCGCGCTGGCGCTGGCGAGCGCGGCGAGCGACACACCGCTGCCGAAGAACCTGGTGGCGATCGGTGAGGTGGGG
CTCGCGGGCGAGGTCAGGCGGGTCACGGGCGTGCAGCGCAGGCTGGCCGAGGCGCACCGGCTCGGTTTCACGCACGCCCT
GGTCCCGACCGATCCGGGCAAGGTCCCGGCGGGCATGAAGGTCACGGAAGTGGCCGACATGGGGGACGCGCTCAGGGCGC
TTCCGCGCCGGTCCCGGGCACAGGCCCCCCGGGAGGAGGACGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(84-223)

Subunit ChlI of Mg-chelatase (ChlI)

(370-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.929

96.383

0.423
  radA Streptococcus pneumoniae Rx1

42.857

96.809

0.415
  radA Streptococcus pneumoniae D39

42.857

96.809

0.415
  radA Streptococcus pneumoniae R6

42.857

96.809

0.415
  radA Streptococcus pneumoniae TIGR4

42.857

96.809

0.415
  radA Streptococcus mitis SK321

44.522

91.277

0.406
  radA Streptococcus mitis NCTC 12261

44.289

91.277

0.404