Detailed information    

insolico Bioinformatically predicted

Overview

Name   comH   Type   Machinery gene
Locus tag   MPG31_RS00010 Genome accession   NZ_CP094074
Coordinates   1589..3028 (+) Length   479 a.a.
NCBI ID   WP_245015279.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe103     
Function   import of DNA into the periplasm (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1..8028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG31_RS00005 (MPG31_00005) dnaA 1..1368 (+) 1368 WP_245015278.1 chromosomal replication initiator protein DnaA -
  MPG31_RS00010 (MPG31_00010) comH 1589..3028 (+) 1440 WP_245015279.1 competence protein Machinery gene
  MPG31_RS00020 (MPG31_00020) - 3208..3960 (+) 753 WP_245015280.1 exodeoxyribonuclease III -
  MPG31_RS00025 (MPG31_00025) - 3957..4592 (-) 636 WP_245015281.1 outer membrane protein -
  MPG31_RS00030 (MPG31_00030) - 4596..4949 (-) 354 WP_245015282.1 hypothetical protein -
  MPG31_RS00035 (MPG31_00035) recG 5031..6896 (+) 1866 WP_245015283.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 54978.78 Da        Isoelectric Point: 7.1152

>NTDB_id=666449 MPG31_RS00010 WP_245015279.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe103]
MKKTLCLSFFLTFSNPLQALVIELLEEIKTSPHKGTFKAKVLDSKEPRQVLGVYNISPHKKLTLTITHISTAIVYQPLDE
KLSLETTLNPNRSTIPRNTQIVFSSKELKESHPHQMPSLNAPIQKPQNKPTSSQQSSQNFSYSESKLGSKNPKNSLLQPL
ATPSKISSANEVKTPTNDTKPPLRHSSEDQENNLFVTPPTEKTLPNNTPNADTNEHHENNENRDNVEKQTIRDPNVKEFA
CGKWVYDDENLQAYRPSILKRIDEDKQTATDITPCDYSNAENKSGKITTPYTKISVHKTEPLEEPQTFEAKNHFTILQAR
SSTEKCKRARVRKDGTTRQCYLIEEPLKQAWESEYQITTQLVKAVYERPKQDDQIEPTFYETSELAYSSTRKSEITHNEL
NLNEKFMEFVEVYEGHYLNDIVKESSEYKEWVKNHVRFKEGVCMVLEIEEQPRAKSTPLSIENSRVVCVKKGNYLFNEV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=666449 MPG31_RS00010 WP_245015279.1 1589..3028(+) (comH) [Helicobacter pylori strain Hpfe103]
ATGAAAAAAACCCTTTGTCTGTCTTTCTTTCTGACTTTCTCTAACCCTCTTCAAGCCCTTGTGATCGAGCTTTTAGAAGA
AATCAAAACTTCGCCGCATAAAGGCACTTTTAAGGCTAAAGTCCTTGATTCTAAAGAACCAAGACAAGTTTTAGGCGTTT
ATAATATCTCCCCACACAAAAAACTCACGCTCACTATCACCCACATATCCACTGCAATTGTCTATCAACCCCTTGATGAA
AAACTTTCTTTAGAAACGACCTTAAACCCTAACCGCTCTACTATCCCTAGAAACACCCAAATTGTTTTTTCTTCAAAAGA
GTTGAAAGAGTCGCACCCGCACCAAATGCCTTCTTTAAACGCACCCATACAAAAACCACAAAACAAACCCACTTCATCGC
AACAATCTTCTCAAAACTTCTCTTACTCAGAGTCCAAACTAGGCTCTAAAAACCCTAAAAACAGCCTTTTACAACCTTTA
GCCACTCCTAGTAAAATAAGCTCCGCTAATGAAGTTAAAACGCCAACAAACGACACTAAACCCCCTTTAAGGCATTCTTC
AGAAGATCAAGAAAACAACCTCTTTGTAACGCCACCCACTGAAAAAACGCTCCCTAACAACACCCCTAACGCTGATACTA
ATGAACACCATGAAAACAATGAGAATAGGGATAATGTGGAAAAACAAACGATTAGAGATCCTAATGTTAAAGAATTTGCG
TGCGGGAAGTGGGTCTATGATGATGAAAATTTACAAGCCTATCGCCCAAGCATTTTAAAACGCATTGATGAAGACAAGCA
GACTGCGACAGACATTACCCCTTGCGACTACAGCAACGCTGAAAATAAAAGCGGTAAAATCACTACCCCCTATACTAAAA
TCTCTGTTCATAAAACAGAGCCTTTAGAAGAGCCACAAACTTTTGAAGCTAAAAACCATTTTACCATCCTCCAAGCCAGA
AGCTCTACAGAAAAATGCAAAAGGGCCAGAGTGCGAAAAGACGGCACAACCAGGCAATGCTATCTCATAGAAGAGCCTTT
AAAACAAGCGTGGGAGAGCGAGTATCAAATCACCACGCAATTAGTGAAAGCTGTATATGAACGCCCCAAACAAGACGATC
AAATAGAGCCGACTTTCTATGAAACCAGCGAATTGGCTTATTCTTCCACACGAAAAAGCGAAATAACGCATAATGAATTG
AATTTGAATGAAAAGTTCATGGAATTTGTAGAAGTGTATGAGGGGCATTATTTAAACGATATAGTCAAAGAAAGCAGTGA
ATACAAAGAATGGGTTAAAAACCATGTGCGCTTTAAAGAAGGGGTGTGCATGGTTTTAGAAATAGAAGAGCAACCACGAG
CCAAAAGCACGCCTTTGAGCATTGAAAACTCTCGTGTTGTTTGTGTCAAAAAGGGGAATTATTTATTCAACGAAGTTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comH Helicobacter pylori 26695

92.067

100

0.921