Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   MPG32_RS06955 Genome accession   NZ_CP094073
Coordinates   1460617..1460898 (-) Length   93 a.a.
NCBI ID   WP_140496856.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe104     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1455617..1465898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG32_RS06935 (MPG32_06935) - 1456327..1457757 (-) 1431 WP_245036868.1 COG3014 family protein -
  MPG32_RS06945 (MPG32_06945) comB4 1457989..1460352 (-) 2364 WP_245036869.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  MPG32_RS06950 (MPG32_06950) comB3 1460354..1460617 (-) 264 WP_245019547.1 competence protein ComB Machinery gene
  MPG32_RS06955 (MPG32_06955) comB2 1460617..1460898 (-) 282 WP_140496856.1 TrbC/VirB2 family protein Machinery gene
  MPG32_RS06960 (MPG32_06960) - 1461043..1461870 (-) 828 WP_245036870.1 DUF5718 family protein -
  MPG32_RS06965 (MPG32_06965) - 1461962..1463014 (-) 1053 WP_245036871.1 MnmA/TRMU family protein -
  MPG32_RS06970 (MPG32_06970) dnaG 1463011..1464690 (-) 1680 WP_245036872.1 DNA primase -
  MPG32_RS06975 (MPG32_06975) groES 1464965..1465324 (+) 360 WP_245036873.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10567.82 Da        Isoelectric Point: 9.1713

>NTDB_id=666448 MPG32_RS06955 WP_140496856.1 1460617..1460898(-) (comB2) [Helicobacter pylori strain Hpfe104]
MSAHFLRIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=666448 MPG32_RS06955 WP_140496856.1 1460617..1460898(-) (comB2) [Helicobacter pylori strain Hpfe104]
ATGTCCGCTCATTTTTTAAGAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978